View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_121 (Length: 319)
Name: NF9005_low_121
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32121182 - 32121420
Alignment:
| Q |
1 |
accttttctttttatatgatacaataattaattggaaaaaatatataaatttagcataatatcctattggtacaaaagtaatgtaacattaacttttgaa |
100 |
Q |
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| T |
32121182 |
accttttctttttatatgatacaataattaattggaaaaaatatataaatttagcataatatc-tattgatacaaaagtaatgtaacattaacttttgaa |
32121280 |
T |
|
| Q |
101 |
agagacttgaattgaaggagtttatgcacctcactaaaagttctaaagcttatgcaccttattgaaagttttcaagtaaactctttattggaaaatgctc |
200 |
Q |
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| T |
32121281 |
agagacttgaattgaaggagtttatgcacctcactaaaagttctaaagcttatgcaccttattgaaagttttcaagtaaactctttactggaaaatgctc |
32121380 |
T |
|
| Q |
201 |
ttcccccatcaggaattgctcgctcccaactaaactttca |
240 |
Q |
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| T |
32121381 |
ttcccccgtcacgaattgctcgctcccaaccaaactttca |
32121420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 32122523 - 32122586
Alignment:
| Q |
237 |
ttcaccttgtatgaaaacttcaaaggaaacactacaacacaattttactagtactttagaatgt |
300 |
Q |
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| T |
32122523 |
ttcaccttgtatgaaaacttcaaaggaaacactacaacacaattttactagtactttagaatgt |
32122586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 53214288 - 53214335
Alignment:
| Q |
192 |
aaaatgctcttcccccatcaggaattgctcgctcccaactaaactttc |
239 |
Q |
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| T |
53214288 |
aaaatgctctcctcccatcaaaaattgctcgctcccaactaaactttc |
53214335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 28009282 - 28009235
Alignment:
| Q |
193 |
aaatgctcttcccccatcaggaattgctcgctcccaactaaactttca |
240 |
Q |
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| T |
28009282 |
aaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttca |
28009235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 28066585 - 28066538
Alignment:
| Q |
193 |
aaatgctcttcccccatcaggaattgctcgctcccaactaaactttca |
240 |
Q |
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| T |
28066585 |
aaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttca |
28066538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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