View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_127 (Length: 314)
Name: NF9005_low_127
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_127 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 32120863 - 32121181
Alignment:
| Q |
1 |
ctcagctaccatttttgtcctctctaagcttaatcaacattaaaataattagcatatatggaaatgatattccaaattcatagttttgtcttaaatttat |
100 |
Q |
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| T |
32120863 |
ctcagctaccatttttgtcctctctaagcttaatcaacattaaaataattaccatatatggaaatgatattccaaattcatagttttctcttaaatttat |
32120962 |
T |
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| Q |
101 |
ttatttatttatggaacagggtagtagactagtagtatatcttttgtaagccaaaa-----ttatttcatgtcatgtcattttccctttaccatgggaac |
195 |
Q |
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| T |
32120963 |
ttatttatttatggaacagggtagtagactagtagtatatcttttgtaagccaaaagaaaattatttcatgtcatgtcattttccctttaccatgggaac |
32121062 |
T |
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| Q |
196 |
tcaattcatttattggtatatatatgtaattaatttttcaatttcttttatttcttaaaaatgatatacatgtaataattcattttcctgattccaaatt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32121063 |
tcaattcatttattggtatatatatgtaattaatttttcaatttcttttatttcttaaaaatgatatacatgtaataattcattttcctgattccaaatt |
32121162 |
T |
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| Q |
296 |
tccagcatcaatttcgttt |
314 |
Q |
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| T |
32121163 |
tccagtatcaatttcgttt |
32121181 |
T |
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