View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_129 (Length: 311)
Name: NF9005_low_129
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_129 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 45370514 - 45370637
Alignment:
| Q |
170 |
aaaagggtttatgggttaaataaagttaacaagaaagaaaaacgattcgcactgactcggaccaacaacaactgcgattaaattcattcgtccactatta |
269 |
Q |
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| T |
45370514 |
aaaagggtttatggattaaataaaattaacaagaaagaaaaacgattcgcac-gactcggaccaacaacaactgcgattaaattcattcgtccactatta |
45370612 |
T |
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| Q |
270 |
ttacggttagttcactgactcttgt |
294 |
Q |
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| T |
45370613 |
ttacggttagttcactgactcttgt |
45370637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 45370404 - 45370503
Alignment:
| Q |
32 |
agcaattataattaagaattattttttcaacagtca-tgctaactcgtgttcttaggacacatgttaagcaataacaattttgcattgaaaaatataata |
130 |
Q |
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| T |
45370404 |
agcaattataattaaggattattttttcaatagtcaatactaactcgtgttcttaaga-acatgttaagcaataacaattttgcattgaaaaatataata |
45370502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 50531398 - 50531351
Alignment:
| Q |
15 |
gacgcagtactcatatcagcaattataattaagaattattttttcaac |
62 |
Q |
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| T |
50531398 |
gacgcagtactcataccagcaattataatcaaggattattttatcaac |
50531351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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