View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_133 (Length: 302)

Name: NF9005_low_133
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_133
NF9005_low_133
[»] chr6 (33 HSPs)
chr6 (5-294)||(3404701-3404990)
chr6 (22-230)||(34572850-34573058)
chr6 (159-252)||(19305469-19305562)
chr6 (55-288)||(18147275-18147508)
chr6 (134-230)||(16130995-16131091)
chr6 (132-251)||(20148323-20148440)
chr6 (132-251)||(22184388-22184505)
chr6 (132-291)||(12449549-12449708)
chr6 (95-251)||(34187305-34187456)
chr6 (130-252)||(9291984-9292105)
chr6 (71-248)||(14268440-14268617)
chr6 (139-248)||(15480314-15480423)
chr6 (95-294)||(30680955-30681155)
chr6 (54-247)||(11087512-11087705)
chr6 (165-230)||(689856-689921)
chr6 (138-251)||(9277273-9277385)
chr6 (132-230)||(17380124-17380222)
chr6 (159-252)||(22572050-22572142)
chr6 (143-211)||(12203615-12203683)
chr6 (159-230)||(4251037-4251108)
chr6 (140-230)||(10115659-10115749)
chr6 (134-252)||(33596866-33596984)
chr6 (191-252)||(25008415-25008476)
chr6 (134-225)||(19277044-19277135)
chr6 (132-252)||(9403177-9403297)
chr6 (173-252)||(14080489-14080567)
chr6 (183-230)||(31295552-31295599)
chr6 (135-230)||(34064222-34064317)
chr6 (210-252)||(16343584-16343626)
chr6 (134-248)||(19730559-19730673)
chr6 (183-261)||(27860965-27861043)
chr6 (161-229)||(18566685-18566753)
chr6 (159-223)||(31423830-31423894)
[»] chr4 (15 HSPs)
chr4 (58-248)||(47253286-47253476)
chr4 (114-248)||(19809710-19809844)
chr4 (134-252)||(12683790-12683908)
chr4 (160-233)||(19643726-19643799)
chr4 (77-294)||(10981829-10982044)
chr4 (58-208)||(2674466-2674616)
chr4 (132-251)||(29157108-29157227)
chr4 (71-198)||(40978976-40979103)
chr4 (91-252)||(15742077-15742239)
chr4 (138-258)||(15514533-15514653)
chr4 (175-250)||(14003073-14003148)
chr4 (135-251)||(5518546-5518662)
chr4 (140-187)||(17121621-17121668)
chr4 (202-252)||(13171084-13171134)
chr4 (130-179)||(50151768-50151817)
[»] chr5 (14 HSPs)
chr5 (58-287)||(20025253-20025482)
chr5 (77-269)||(27083149-27083340)
chr5 (132-251)||(26994572-26994691)
chr5 (160-248)||(22903102-22903190)
chr5 (134-252)||(25537410-25537528)
chr5 (71-180)||(29278942-29279051)
chr5 (77-229)||(8938940-8939091)
chr5 (160-230)||(34493544-34493610)
chr5 (134-227)||(24647318-24647411)
chr5 (159-252)||(32418479-32418572)
chr5 (159-230)||(25333762-25333833)
chr5 (201-247)||(19846079-19846125)
chr5 (132-250)||(22865768-22865886)
chr5 (183-247)||(19993182-19993246)
[»] chr8 (16 HSPs)
chr8 (132-287)||(30477611-30477766)
chr8 (57-250)||(6927985-6928174)
chr8 (73-294)||(13754721-13754942)
chr8 (158-261)||(24507453-24507556)
chr8 (159-249)||(21416746-21416836)
chr8 (95-252)||(26916826-26916984)
chr8 (77-198)||(23497075-23497195)
chr8 (120-295)||(13764951-13765126)
chr8 (159-252)||(17927697-17927790)
chr8 (159-230)||(17698278-17698349)
chr8 (165-243)||(24070866-24070945)
chr8 (160-252)||(15058040-15058132)
chr8 (138-248)||(18322952-18323062)
chr8 (192-248)||(23269255-23269311)
chr8 (135-252)||(3459453-3459570)
chr8 (132-251)||(5859821-5859940)
[»] chr7 (18 HSPs)
chr7 (140-252)||(9135335-9135447)
chr7 (132-252)||(5863192-5863312)
chr7 (159-252)||(26762904-26762997)
chr7 (165-250)||(9867938-9868023)
chr7 (183-252)||(16987109-16987178)
chr7 (59-211)||(16203768-16203920)
chr7 (134-230)||(29373473-29373569)
chr7 (53-208)||(16204340-16204495)
chr7 (132-250)||(13292089-13292207)
chr7 (159-252)||(7486550-7486643)
chr7 (172-261)||(21161237-21161326)
chr7 (164-251)||(39879393-39879480)
chr7 (134-252)||(10287564-10287682)
chr7 (135-195)||(43172005-43172065)
chr7 (183-252)||(5929028-5929097)
chr7 (139-252)||(9573400-9573512)
chr7 (136-173)||(13159444-13159481)
chr7 (183-251)||(34854249-34854317)
[»] chr2 (17 HSPs)
chr2 (35-295)||(45258021-45258281)
chr2 (123-252)||(45715000-45715129)
chr2 (132-252)||(3586368-3586488)
chr2 (159-250)||(24499796-24499887)
chr2 (159-248)||(36267507-36267596)
chr2 (155-287)||(27846508-27846640)
chr2 (159-230)||(12169000-12169071)
chr2 (136-247)||(19919036-19919147)
chr2 (132-269)||(15825142-15825279)
chr2 (183-252)||(18770319-18770388)
chr2 (163-261)||(20120343-20120441)
chr2 (159-294)||(12127656-12127791)
chr2 (159-294)||(10923158-10923293)
chr2 (158-226)||(18134349-18134419)
chr2 (134-252)||(29711023-29711139)
chr2 (136-258)||(18135870-18135992)
chr2 (132-252)||(15390551-15390671)
[»] chr1 (17 HSPs)
chr1 (47-257)||(5671770-5671980)
chr1 (133-252)||(26977745-26977864)
chr1 (165-252)||(12177391-12177478)
chr1 (159-251)||(52565586-52565678)
chr1 (123-230)||(16030422-16030529)
chr1 (70-252)||(34273092-34273273)
chr1 (159-252)||(22414780-22414873)
chr1 (142-294)||(18246106-18246257)
chr1 (159-252)||(16050399-16050492)
chr1 (160-252)||(33101501-33101593)
chr1 (77-215)||(12032166-12032301)
chr1 (77-214)||(5459620-5459757)
chr1 (122-210)||(2140904-2140992)
chr1 (159-248)||(23280255-23280342)
chr1 (115-187)||(8019018-8019090)
chr1 (160-252)||(23728814-23728906)
chr1 (140-186)||(2612638-2612684)
[»] chr3 (17 HSPs)
chr3 (77-248)||(30606937-30607108)
chr3 (132-252)||(16704407-16704527)
chr3 (138-252)||(9801056-9801169)
chr3 (160-229)||(28715482-28715551)
chr3 (160-252)||(17143743-17143835)
chr3 (139-230)||(21342260-21342351)
chr3 (159-250)||(2311827-2311918)
chr3 (159-286)||(17485617-17485744)
chr3 (163-257)||(6109650-6109744)
chr3 (159-252)||(8122908-8123000)
chr3 (159-230)||(20622433-20622506)
chr3 (159-251)||(12516191-12516283)
chr3 (160-252)||(28723768-28723860)
chr3 (134-252)||(14860067-14860185)
chr3 (120-181)||(30429854-30429916)
chr3 (183-248)||(12251997-12252062)
chr3 (159-251)||(431309-431401)
[»] scaffold0002 (2 HSPs)
scaffold0002 (134-251)||(120979-121096)
scaffold0002 (159-252)||(379721-379814)
[»] scaffold0505 (1 HSPs)
scaffold0505 (160-257)||(7885-7982)
[»] scaffold0360 (1 HSPs)
scaffold0360 (139-252)||(13927-14040)
[»] scaffold0291 (2 HSPs)
scaffold0291 (159-251)||(15423-15515)
scaffold0291 (102-252)||(8516-8663)
[»] scaffold0054 (1 HSPs)
scaffold0054 (132-251)||(68768-68885)
[»] scaffold0023 (1 HSPs)
scaffold0023 (132-252)||(95776-95896)
[»] scaffold0074 (1 HSPs)
scaffold0074 (138-252)||(35258-35373)
[»] scaffold0140 (1 HSPs)
scaffold0140 (113-230)||(6325-6443)
[»] scaffold0294 (1 HSPs)
scaffold0294 (132-249)||(208-326)
[»] scaffold0205 (2 HSPs)
scaffold0205 (159-252)||(22891-22984)
scaffold0205 (160-252)||(10909-11001)
[»] scaffold0057 (1 HSPs)
scaffold0057 (159-248)||(73795-73884)
[»] scaffold0263 (1 HSPs)
scaffold0263 (132-248)||(20463-20579)
[»] scaffold0012 (1 HSPs)
scaffold0012 (139-186)||(149217-149264)
[»] scaffold0034 (1 HSPs)
scaffold0034 (121-247)||(18426-18551)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 3404701 - 3404990
Alignment:
Q  5 tgaaggagcacgccgacatcactgcatcgtatcacacccgagcacggctccatgcgagaatcactctacacatgtcctctaaccactccttaatctcacg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  3404701 tgaaggagcacgccgacatcactgcatcgtatcacacccgagcacgcctccacgcgagaatcactctacacgtgtcctctaaccactccttaatcacacg 3404800  T
Q  105 ctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcaca 204  Q
    ||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  3404801 ctgcaaaacccagagacggttattttcacacgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttctacaca 3404900  T
Q  205 ctctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacagacatatttcgtctcattgcgaagactcatcaccacc 294  Q
    |||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  3404901 ctctttctcagttccattactgacttaagtgttagagtgttaatgtgcctacagacacatttcgtctcattgcgaagactcatcaccacc 3404990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 34572850 - 34573058
Alignment:
Q  22 atcactgcatcgtatcacacccgagcacggctccatgcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaac 121  Q
    |||| ||||||| ||||||  |||||||| ||||||| |  |||||| |||||| |||||||||| |||||| ||||| ||||  ||| | |  ||| |     
T  34572850 atcaatgcatcgaatcacattcgagcacgcctccatgtgccaatcaccctacacgtgtcctctaatcactccctaatcacacgtcgcatatcatggagat 34572949  T
Q  122 ggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccat 221  Q
    | ||||| |||| ||||||||||||||||| | |||||||||||||||| |||||||||| ||||||| ||||||| | |||||| ||||| | ||| ||    
T  34572950 gattattctcacacgcgcctatataagggtgacttaacttcaccctcaatgtatgattcacttttcaccacactttctacacactttttcttagttctat 34573049  T
Q  222 tactgactt 230  Q
    |||| ||||    
T  34573050 tactaactt 34573058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 19305562 - 19305469
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||| ||||||||||||||| || |||  |||||||||||||    
T  19305562 cttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagttccattactgacttgagcgtttaagtgctaacgtgc 19305469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 288
Target Start/End: Complemental strand, 18147508 - 18147275
Alignment:
Q  55 catgcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcac-gcgcgcctatataagggtaa 153  Q
    |||||||| |||||  ||||||||||||||||||  ||| ||||| ||||||||||| ||| ||  |||||| |  ||  |||| ||||||||||||| |    
T  18147508 catgcgaggatcaccttacacatgtcctctaaccg-tccctaatcacacgctgcaaaacccagaggcggttaatcccaatgcgcacctatataagggtga 18147410  T
Q  154 tttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcg 253  Q
      |  ||||||||| ||||||||| ||| ||||||||||||||| | |||||||||||||  |||||||| |||||| || ||| ||||| |||||| |     
T  18147409 cattgcttcaccctaaaggtatgagtcacttttcacaacactttctacacactctttctcggttccattagtgacttgagcgttggagtgttaacgttcc 18147310  T
Q  254 tacagacatatttcgtctcattgcgaagactcatc 288  Q
    ||||| ||  |||||| |||  | |||||||||||    
T  18147309 tacaggcacctttcgtttcaccgagaagactcatc 18147275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 16131091 - 16130995
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    ||||||||||||||||||||  |   ||||||||||||||||||||||  |||||||||||||| || ||||||||| ||| |||||||||||||||    
T  16131091 gcgcgcctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttccattactgactt 16130995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 20148440 - 20148323
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    ||||| |||||||||||||| |  |  ||||||| ||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||| ||||     
T  20148440 acgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccattactaacttg 20148343  T
Q  232 agtgttagagtgctaacgtg 251  Q
    || | | |||||||||||||    
T  20148342 agcgatggagtgctaacgtg 20148323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 22184388 - 22184505
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    ||||| |||||||||||||| |  |  ||||||| ||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||| ||||     
T  22184388 acgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccattactaacttg 22184485  T
Q  232 agtgttagagtgctaacgtg 251  Q
    || | | |||||||||||||    
T  22184486 agcgatggagtgctaacgtg 22184505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 132 - 291
Target Start/End: Original strand, 12449549 - 12449708
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    ||||||||||||||||||||||  |   |||||||||||||||    ||| ||| ||||||||||  | |||||||||| |||  ||||||||||||||     
T  12449549 acgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagctccattactgacttg 12449648  T
Q  232 agtgttagagtgctaacgtgcgtacagacatatttcgtctcattgcgaagactcatcacc 291  Q
    || || ||||||||||||||| ||||||||  ||||||| ||   |||||||||||||||    
T  12449649 agcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagactcatcacc 12449708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 34187456 - 34187305
Alignment:
Q  95 taatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacac 194  Q
    ||||| ||||||||| | |||||| ||||||||| |||||   |||||||||||||| |     ||||||||||||||||  ||||| ||| ||| ||||    
T  34187456 taatcacacgctgcatatcccggagacggttattctcacgtatgcctatataagggtgag----cttcaccctcaaggtacaattcacttt-caccacac 34187362  T
Q  195 tttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtg 251  Q
    ||| | |||||||||||||| ||||||||||||||| |||||| | |||||||||||    
T  34187361 tttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtg 34187305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 9291984 - 9292105
Alignment:
Q  130 tcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgact 229  Q
    ||||| |||||||||||| ||| | ||| ||||||||||||||||||||||| ||||| | ||||||| | || ||| ||||||| ||||| ||||||||    
T  9291984 tcacgtgcgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttc-ccacactttttacatactatttctcagttccaatactgact 9292082  T
Q  230 taagtgttagagtgctaacgtgc 252  Q
    | || ||||| ||||||||||||    
T  9292083 tgagcgttagcgtgctaacgtgc 9292105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 248
Target Start/End: Complemental strand, 14268617 - 14268440
Alignment:
Q  71 tacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccc-tca 169  Q
    ||||| |||||||||||| |||| ||||| |||||   |||||| |||||||||||| ||   ||| |||||||||||||| | ||| |||||||| |||    
T  14268617 tacacgtgtcctctaaccgctccctaatcacacgccataaaccc-ggaaacggttatctttgtgcgtgcctatataagggtgacttagcttcacccctca 14268519  T
Q  170 aggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
     | ||||||||| |||||| |||||||| | |||||| | ||| | ||||||||||||||| || ||| ||||||||||    
T  14268518 cgatatgattcacttttcaaaacactttctacacactatgtcttagttccattactgacttcagcgttggagtgctaac 14268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 15480314 - 15480423
Alignment:
Q  139 cctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgtta 238  Q
    ||||||||||||| | ||| |||||| |||||||||||||||| ||||||||||||||| | |||||| ||||||| || ||||| |||||| || |||     
T  15480314 cctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacactttctacacactttttctcagtttcattattgacttgagagttc 15480413  T
Q  239 gagtgctaac 248  Q
    ||||| ||||    
T  15480414 gagtgataac 15480423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 294
Target Start/End: Complemental strand, 30681155 - 30680955
Alignment:
Q  95 taatctcacgctgcaaaccccggaaacggttattttca-cgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaaca 193  Q
    ||||| ||||| ||||| | ||||  |||||||| ||| ||||||||||| ||| ||| |  |  ||||| ||||||||||||||||| ||||||||| |    
T  30681155 taatcacacgccgcaaaactcggaggcggttattctcaacgcgcgcctatctaaaggtgacattgcttcatcctcaaggtatgattcacttttcacaata 30681056  T
Q  194 ctttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacagacatatttcgtctcattgcgaagactcatcaccac 293  Q
    | || | ||| |||||| ||| || |||||||||||| || ||| |||||||||||||  | ||||||  ||||||| ||  ||||||||||||| ||||    
T  30681055 cattctacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccgcgaagactcatctccac 30680956  T
Q  294 c 294  Q
    |    
T  30680955 c 30680955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 11087705 - 11087512
Alignment:
Q  54 ccatgcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttca-cgcgcgcctatataagggta 152  Q
    ||||||||| ||||| |||||| ||||||||||||  ||||||||  ||||| ||| |  ||||| || |||||  ||| ||||| |||||||||||||     
T  11087705 ccatgcgaggatcaccctacacgtgtcctctaaccg-tccttaattacacgccgcataatccggagacagttatgctcaacgcgcacctatataagggtg 11087607  T
Q  153 atttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaa 247  Q
    |  |   |||| ||||||||||||||||| ||||||||||||  | | || ||||||||||| || ||||||||||||||| || | ||||||||    
T  11087606 aacttgtttcatcctcaaggtatgattcacttttcacaacacaatctacatactctttctcagttacattactgacttaagggtcaaagtgctaa 11087512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 689856 - 689921
Alignment:
Q  165 cctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||||||||| |||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  689856 cctcaaggtacgattcacttttcacaacactttatacacacactttctcagttccattactgactt 689921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 9277273 - 9277385
Alignment:
Q  138 gcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgtt 237  Q
    |||| ||||||||| | ||| ||||||||||||||||||||||| ||| | | ||||||| | || ||||||||||| ||||| ||||||||| || |||    
T  9277273 gcctgtataagggtgagttagcttcaccctcaaggtatgattcacttt-ctccacactttttacatactctttctcagttccaatactgacttgagcgtt 9277371  T
Q  238 agagtgctaacgtg 251  Q
    | ||||||||||||    
T  9277372 atagtgctaacgtg 9277385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 17380222 - 17380124
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||| ||||||||||||||| |  |  | ||| ||| |||||| |||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  17380222 acgcacgcctatataagggtgaccttgcgtcaacctgaaggtaagattcacttttcacaacactttattcacactctttctcagttctattactgactt 17380124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 22572142 - 22572050
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||| ||||||||| ||| |||||||| || | |||||||||| ||||||||||||||||| | || || | |||||||||||||    
T  22572142 cttcaccctcaagatatgattcactttacacaacaccttctacacactcttt-tcaattccattactgacatgagcgtcatagtgctaacgtgc 22572050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 12203615 - 12203683
Alignment:
Q  143 tataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttc 211  Q
    ||||||||| | |||||||||||||||| |||||||||| ||||||||||||||| | || ||||||||    
T  12203615 tataagggtgacttaacttcaccctcaaagtatgattcacttttcacaacactttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 4251037 - 4251108
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    ||||||||||||| ||||||| | ||||||||||||| | | |||||||||||||| || ||||||||||||    
T  4251037 cttcaccctcaagatatgatttacttttcacaacactctctccacactctttctcattttcattactgactt 4251108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 10115659 - 10115749
Alignment:
Q  140 ctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||||||||| | | ||| |||||||||| |||||||||||| ||||||||| ||||| | | | |||||||||| || ||||||||||||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaactttttactcgctctttctcagtttcattactgactt 10115749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 33596984 - 33596866
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    ||||||||||||||| || |  |  ||||| ||||||||||||||||  ||||||||||||||| | |||||| ||||| | || ||||||||| || ||    
T  33596984 gcgcgcctatataagagtgaacttgcttcatcctcaaggtatgattccattttcacaacactttctacacactttttcttagtttcattactgagttgag 33596885  T
Q  234 tgttagagtgctaacgtgc 252  Q
     ||||||||| ||| ||||    
T  33596884 cgttagagtgttaatgtgc 33596866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 25008415 - 25008476
Alignment:
Q  191 acactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||| | |||||||||||||||||||||||||||||| || ||| ||||| ||||||||    
T  25008415 acactttttacacactctttctcaattccattactgacttgagcgttggagtgttaacgtgc 25008476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 19277044 - 19277135
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattact 225  Q
    |||||||||||||||||| |  |  ||||||||||||||||    ||| ||||||||||||||  | |||||||||||||| ||||||||||    
T  19277044 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattact 19277135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 9403297 - 9403177
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||||| ||||||||||||| |  |  ||||||||||||||||    ||| ||| ||||||||||  | |||||||||||||| |||||||| ||||||     
T  9403297 acgcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccattattgacttg 9403198  T
Q  232 agtgttagagtgctaacgtgc 252  Q
    || ||  |||| |||||||||    
T  9403197 agcgtcggagttctaacgtgc 9403177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 14080567 - 14080489
Alignment:
Q  173 tatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||| ||||||||||||||  | |||||||||||||| || ||||||| |||| || || |||||||||| ||||    
T  14080567 tatgattcacttttcacaacacttactacacactctttctcagtt-cattactaacttgagcgtcagagtgctaatgtgc 14080489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 31295552 - 31295599
Alignment:
Q  183 ttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||||||||||||| || |||||||||||||| || ||||||||||||    
T  31295552 ttttcacaacacttcatacacactctttctcagtttcattactgactt 31295599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 34064317 - 34064222
Alignment:
Q  135 cgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    ||||||||||||||||| |  |  ||||||||||||||||    ||| ||||||||||||||  | |||||||||||| | || ||||||||||||    
T  34064317 cgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttcttagtttcattactgactt 34064222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 16343626 - 16343584
Alignment:
Q  210 tctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||    
T  16343626 tctcagttccattactgacttgagtgttggagtgctaacgtgc 16343584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 19730559 - 19730673
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    |||| ||||||||||||| |  |  ||||||||||||||||    ||| ||| ||| ||||||  | |||||||||||||| |||||||| |||||| ||    
T  19730559 gcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccattattgacttgag 19730658  T
Q  234 tgttagagtgctaac 248  Q
     ||| ||||||||||    
T  19730659 cgttggagtgctaac 19730673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 27860965 - 27861043
Alignment:
Q  183 ttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacagaca 261  Q
    ||||||||||||||  | ||| |||| | ||| ||||||||||||||| ||||||||||| ||||| ||| | ||||||    
T  27860965 ttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttagagtactaacatgcctgcagaca 27861043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 18566753 - 18566685
Alignment:
Q  161 tcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgact 229  Q
    ||||||||||||||   |||| |||| ||||| |||| | |||| ||||||||| ||||||||||||||    
T  18566753 tcaccctcaaggtagacttcactttttacaacgctttctacacaatctttctcagttccattactgact 18566685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 31423830 - 31423894
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccatta 223  Q
    |||||||||||||  |||||||| || |||||||||||| | || ||||||||||| || |||||    
T  31423830 cttcaccctcaagacatgattcacttctcacaacactttctacatactctttctcagtttcatta 31423894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 248
Target Start/End: Complemental strand, 47253476 - 47253286
Alignment:
Q  58 gcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaattta 157  Q
    ||||| |||||||||||  ||||||||||   |||  ||||| ||| | ||||| |||||| || |||||| ||| |||||||||||||||||| | |||    
T  47253476 gcgaggatcactctacatgtgtcctctaattgctctctaatcacacaccgcaaaacccggagacagttattatcatgcgcgcctatataagggtgactta 47253377  T
Q  158 acttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
     ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||| || ||| ||||||||||    
T  47253376 gcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaac 47253286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 19809844 - 19809710
Alignment:
Q  114 ccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctc 213  Q
    ||||| || |||||| |||||||||||||| ||||||| | |||  |||||||||||||||| ||||| ||||||||||||||| | ||||||||||||     
T  19809844 ccggagacagttattctcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttctacacactctttctt 19809745  T
Q  214 aattccattactgacttaagtgttagagtgctaac 248  Q
    | || |||||||||||| || ||| ||||||||||    
T  19809744 agtttcattactgacttgagcgttggagtgctaac 19809710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 12683908 - 12683790
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    ||||||||| |||||||| |  |  ||||||||| ||||||||||||| ||||||||||||||| | |||||||||||||| || ||||||| |||| ||    
T  12683908 gcgcgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgag 12683809  T
Q  234 tgttagagtgctaacgtgc 252  Q
     ||| ||||||||||||||    
T  12683808 cgttggagtgctaacgtgc 12683790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 19643799 - 19643726
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    |||||||||||||||||||||| ||||||||| ||||| | |||||||||||||| ||||||||||||||||||    
T  19643799 ttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcagttccattactgacttaag 19643726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 294
Target Start/End: Complemental strand, 10982044 - 10981829
Alignment:
Q  77 tgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatg 176  Q
    |||||||||||| |||| ||||| || || ||| | ||||||  |||||||| |||| | || |||||||||||| | |||  ||| ||| ||| |||||    
T  10982044 tgtcctctaaccgctccctaatcacaagccgcatatcccggaggcggttattctcacacacgtctatataagggtgacttagtttctccc-caatgtatg 10981946  T
Q  177 attcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacagacatatttcgtctcattg 276  Q
    ||||| ||||| || |||||| | |||||||||||||  ||||||||||||||| |||||| |||||| |||||   | ||| ||  ||||||| || ||    
T  10981945 attcacttttccca-cactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtcccactg 10981847  T
Q  277 cgaagactcatcaccacc 294  Q
    ||||||||||||| ||||    
T  10981846 cgaagactcatcatcacc 10981829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 208
Target Start/End: Original strand, 2674466 - 2674616
Alignment:
Q  58 gcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttca-cgcgcgcctatataagggtaattt 156  Q
    ||||| ||||| |||||| |||||||||||   ||| ||||| ||||| |||||  ||||| ||||||||  ||| ||||||| ||||||||||| |  |    
T  2674466 gcgaggatcaccctacacgtgtcctctaactg-tccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaact 2674564  T
Q  157 aacttcaccctcaaggtatgattcatttttcacaacactttatgcacactct 208  Q
     |||||| ||||||||||||||||| ||||||||||||||| | ||||||||    
T  2674565 tacttcatcctcaaggtatgattcacttttcacaacactttctacacactct 2674616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 29157227 - 29157108
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||||||||||||||||||| |  | |||||||| |||||||||| |||| ||| ||||||||||  | |||||| ||||||| |||||||||| ||||     
T  29157227 acgcgcgcctatataagggtgaacttacttcaccatcaaggtatggttcactttacacaacacttactacacactttttctcagttccattactaacttg 29157128  T
Q  232 agtgttagagtgctaacgtg 251  Q
    || ||| |||||| ||||||    
T  29157127 agcgttggagtgcaaacgtg 29157108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 40978976 - 40979103
Alignment:
Q  71 tacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaa 170  Q
    ||||||||||||||||||| ||| ||||| || |||||| |  ||||| | ||||||| || ||| ||| || |||||||| | ||||||||||||||||    
T  40978976 tacacatgtcctctaaccattccctaatcacatgctgcatattccggagatggttattctcgcgcacgcttagataagggtgacttaacttcaccctcaa 40979075  T
Q  171 ggtatgattcatttttcacaacacttta 198  Q
    | || |||||| ||||||| ||||||||    
T  40979076 gatacgattcacttttcaccacacttta 40979103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 252
Target Start/End: Original strand, 15742077 - 15742239
Alignment:
Q  91 tccttaatctcacgctgcaaaccccggaaacggttattttca-cgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcac 189  Q
    ||||||||| ||||| ||| | |||||| ||||||||   || | ||||||||||||||||| | ||  |||||  |||||||||    ||| |||||||    
T  15742077 tccttaatcacacgccgcataacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcac 15742176  T
Q  190 aacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||||||  | |||||| ||||||| ||||||||||||||| || || |||||||||||||||    
T  15742177 aacacttcttacacactttttctcagttccattactgacttgagcgtaagagtgctaacgtgc 15742239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 15514533 - 15514653
Alignment:
Q  138 gcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgtt 237  Q
    |||||||||||||| |  |  ||||||||||||||||    ||| ||| ||||||||||  | |||||||||| ||| ||||||||||||||| || |||    
T  15514533 gcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagttccattactgacttgagcgtt 15514632  T
Q  238 agagtgctaacgtgcgtacag 258  Q
     |||||||||||||| |||||    
T  15514633 ggagtgctaacgtgcctacag 15514653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 14003073 - 14003148
Alignment:
Q  175 tgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgt 250  Q
    |||||||||||||| ||||||||   || ||||||||||| ||||||||||||||| || || | |||||||||||    
T  14003073 tgattcatttttcataacactttccacaaactctttctcagttccattactgacttgagcgtcatagtgctaacgt 14003148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 5518662 - 5518546
Alignment:
Q  135 cgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagt 234  Q
    ||||||||||||||||| |  |  |||||||||||||||| |  ||| ||| ||||||||||  | |||| ||| ||||| ||| ||||||||||| ||     
T  5518662 cgcgcctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacattctctctcagttcaattactgacttgagc 5518563  T
Q  235 gttagagtgctaacgtg 251  Q
    |||  ||||||||||||    
T  5518562 gttgaagtgctaacgtg 5518546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 17121621 - 17121668
Alignment:
Q  140 ctatataagggtaatttaacttcaccctcaaggtatgattcatttttc 187  Q
    |||||||||||| |||||||||||||| |||||||| ||||| |||||    
T  17121621 ctatataagggtgatttaacttcacccccaaggtattattcacttttc 17121668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 13171134 - 13171084
Alignment:
Q  202 acactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||||||| |||| ||||||||||||||| || ||| ||||||||||||||    
T  13171134 acactcttgctcagttccattactgacttgagagttggagtgctaacgtgc 13171084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 50151768 - 50151817
Alignment:
Q  130 tcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgatt 179  Q
    |||||| ||||||||||||||| | ||  |||||||||||||||||||||    
T  50151768 tcacgcacgcctatataagggtgactttgcttcaccctcaaggtatgatt 50151817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 287
Target Start/End: Complemental strand, 20025482 - 20025253
Alignment:
Q  58 gcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaattta 157  Q
    ||||| ||| ||||||||||| ||| |||||||||| ||||| ||| |  |||| |||||| ||||||||| |||||||||||| ||||||||| |  ||    
T  20025482 gcgaggatcgctctacacatgacctataaccactccctaatcacacaccacaaaacccggagacggttattctcacgcgcgcctgtataagggtgaccta 20025383  T
Q  158 acttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtaca 257  Q
     |||||||||||||| |||||||| ||| ||||||||||| | |||||||||||||| || |||| |||||   || ||| ||||| ||||||| || ||    
T  20025382 gcttcaccctcaaggaatgattcactttacacaacactttctacacactctttctcagtttcattcctgacagtagcgttggagtgttaacgtgtgtgca 20025283  T
Q  258 gacatatttcgtctcattgcgaagactcat 287  Q
    ||||  ||||||| ||  ||||||||||||    
T  20025282 gacacctttcgtcccaccgcgaagactcat 20025253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 77 - 269
Target Start/End: Original strand, 27083149 - 27083340
Alignment:
Q  77 tgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatg 176  Q
    |||||||||||  |||  ||||| ||||| ||||| || ||| || |||||| ||||||||||||||  |||||| | ||||||||||||||||||||||    
T  27083149 tgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcacgcgcgcctatgcaagggtgacttaacttcaccctcaaggtatg 27083248  T
Q  177 attcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacagacatatttcgt 269  Q
    ||||| ||||||||||||||| | ||||||||||| || || | |||||||||| |||||| |||||||||||||  | |||||| |||||||    
T  27083249 attcacttttcacaacactttctacacactctttcacagtttc-ttactgacttgagtgttggagtgctaacgtgtctgcagacacatttcgt 27083340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 26994572 - 26994691
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||||||||||||||||||| |  |  |||||||| |||||||||||||| |||||||||||| || |  |||||||||||||||||||||||||||||     
T  26994572 acgcgcgcctatataagggtgaccttgcttcacccccaaggtatgattcacttttcacaacaccttctaaacactctttctcaattccattactgacttg 26994671  T
Q  232 agtgttagagtgctaacgtg 251  Q
    || ||  |||||||||||||    
T  26994672 agcgtcggagtgctaacgtg 26994691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 22903190 - 22903102
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
    |||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||| || |||  |||||||||    
T  22903190 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaagtgctaac 22903102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 25537528 - 25537410
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    |||||||||||||||||| |  |  |||||||||||||||||   ||| |||||||||||||| || |||| ||||||||| |||||||||   ||| ||    
T  25537528 gcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaacacttcatacacaatctttctcagttccattacaatcttgag 25537429  T
Q  234 tgttagagtgctaacgtgc 252  Q
     ||| ||||||||||||||    
T  25537428 cgttggagtgctaacgtgc 25537410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 29278942 - 29279051
Alignment:
Q  71 tacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaa 170  Q
    |||||||||||||||||| |||| ||||| |||||| || | ||| ||  |||||||| |||  | ||||||||||||||| | ||||||| ||||||||    
T  29278942 tacacatgtcctctaaccgctccctaatcacacgctccatatcccagaggcggttattctcagacacgcctatataagggtgacttaactttaccctcaa 29279041  T
Q  171 ggtatgattc 180  Q
    | ||||||||    
T  29279042 gatatgattc 29279051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 8939091 - 8938940
Alignment:
Q  77 tgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatg 176  Q
    |||||||||||| |||| ||||| ||||| ||| | ||||||  | |||||| |||| |    |||||||| ||| | ||| |||||||||||| |||||    
T  8939091 tgtcctctaaccgctccctaatcacacgccgcatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatg 8938992  T
Q  177 attcatttttcacaacactttatgcacactctttctcaattccattactgact 229  Q
    ||||| ||||| | ||||||| | |||||||||||||| ||||| ||||||||    
T  8938991 attcacttttc-ccacactttttacacactctttctcagttccaatactgact 8938940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 34493610 - 34493544
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||||||||||||||||||||| ||||||||||||||| |  ||||||||  |||||||||||||||||||    
T  34493610 ttcaccctcaaggtatgattcacttttcacaacactttct--acactctt--tcaattccattactgactt 34493544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 24647411 - 24647318
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactga 227  Q
    |||||||||||||||||| |  |  ||||||||| |||||||   ||| ||||||||||||||  | |||||||||| ||| ||||||||||||    
T  24647411 gcgcgcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactga 24647318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 32418479 - 32418572
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||| ||||||||||||||||| | ||||||||||| | | |||||||||||||  |||||| | |||||| || || |||||| | ||||||    
T  32418479 cttcatcctcaaggtatgattcactcttcacaacactctctacacactctttctctgttccatcagtgacttgagcgtcagagtgttgacgtgc 32418572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 25333833 - 25333762
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||||| ||||| |||||||||| |||| |||||||||| | |||||||| ||| | || ||||||||||||    
T  25333833 cttcactctcaaagtatgattcacttttaacaacactttctacacactctctcttagttacattactgactt 25333762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 19846125 - 19846079
Alignment:
Q  201 cacactctttctcaattccattactgacttaagtgttagagtgctaa 247  Q
    |||||||||||| | ||||| ||||||||| ||||||||||||||||    
T  19846125 cacactctttcttagttccaatactgacttgagtgttagagtgctaa 19846079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 22865886 - 22865768
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||| ||||||||||||||| |  |  ||||||||||||||||    ||| ||||||||||| ||  | |||||| ||||||| |||||||||| ||||     
T  22865886 acgcacgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacatttcttacacactttttctcagttccattactaacttg 22865787  T
Q  232 agtgttagagtgctaacgt 250  Q
    || || | |||||||||||    
T  22865786 agcgtcaaagtgctaacgt 22865768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 19993182 - 19993246
Alignment:
Q  183 ttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaa 247  Q
    |||||||||||||||   ||| |||||||||| ||||||||||||||| ||| || || ||||||    
T  19993182 ttttcacaacactttcaacacgctctttctcagttccattactgacttgagtattggactgctaa 19993246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 30477766 - 30477611
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||| ||||||||||||||| |  | |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| || | ||||||||||     
T  30477766 acgcacgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagtttcgttactgacttg 30477667  T
Q  232 agtgttagagtgctaacgtgcgtacagacatatttcgtctcattgcgaagactcat 287  Q
    || ||| |||||||||||||| | ||||||| ||||||||||  |||||| |||||    
T  30477666 agcgttggagtgctaacgtgcatgcagacatctttcgtctcaccgcgaagtctcat 30477611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 57 - 250
Target Start/End: Original strand, 6927985 - 6928174
Alignment:
Q  57 tgcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttca-cgcgcgcctatataagggt-aat 154  Q
    |||||| |||||||||||| |||||||| |||  |||| |||| ||||||||||| || ||| ||||||||| ||| ||| ||||||    ||||| ||     
T  6927985 tgcgaggatcactctacacgtgtcctcttaccgttcct-aatcacacgctgcaaaacctggagacggttattctcaacgcacgccta----agggtgaaa 6928079  T
Q  155 ttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgt 250  Q
    |||| |||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||  | |||||||||    
T  6928080 ttaa-ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgttgaaatgctaacgt 6928174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 294
Target Start/End: Complemental strand, 13754942 - 13754721
Alignment:
Q  73 cacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaagg 172  Q
    ||||| ||||||||||  ||  ||||| ||||| |||||  ||| | ||||||||| ||| ||| ||||||||||| || | ||| ||||||||||||||    
T  13754942 cacatttcctctaaccgttcactaatcacacgccgcaaaatccgaagacggttattctcatgcgtgcctatataagagtgacttagcttcaccctcaagg 13754843  T
Q  173 tatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacagacatatttcgtctc 272  Q
    || |||||| ||| ||||||||||| | |||||||||||||| || |||||||||||| || | |  |||| ||||||||   ||| ||  ||||||| |    
T  13754842 taggattcactttacacaacactttctacacactctttctcagtttcattactgacttgagcgatgtagtgttaacgtgccagcaggcacctttcgtccc 13754743  T
Q  273 attgcgaagactcatcaccacc 294  Q
    ||||||||||||| ||||||||    
T  13754742 attgcgaagactcttcaccacc 13754721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 24507556 - 24507453
Alignment:
Q  158 acttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtaca 257  Q
    |||||||||||||||||||||||| ||||||||||||||| |  ||||||||||||| |||||||| |||||| |  ||| |||| ||||||||| | ||    
T  24507556 acttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttccattattgacttgatcgttggagtactaacgtgcatgca 24507457  T
Q  258 gaca 261  Q
    ||||    
T  24507456 gaca 24507453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 21416836 - 21416746
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacg 249  Q
    ||||||||| |||||| |||||||||||||||||||||| | |||||||||||||| || |||||||||||| || ||  |||||||||||    
T  21416836 cttcacccttaaggtacgattcatttttcacaacactttctacacactctttctcagtttcattactgacttgagcgtcggagtgctaacg 21416746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 26916826 - 26916984
Alignment:
Q  95 taatctcacgctgcaaaccccggaaacggttattttca-cgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaaca 193  Q
    ||||| ||||| ||||| || |||  |||||||| ||| ||||||||||||||||||  |  |  |||||  |||||||||||| ||| |||||||||||    
T  26916826 taatcacacgccgcaaaacctggaggcggttattctcaacgcgcgcctatataagggcgacattgcttcatgctcaaggtatgactcacttttcacaaca 26916925  T
Q  194 ctttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||| | |||||||| ||||| ||||||||||||||| || ||||| | ||||||||||    
T  26916926 ctttctacacactctctctcagttccattactgacttgagcgttagtgcgctaacgtgc 26916984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 23497075 - 23497195
Alignment:
Q  77 tgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatg 176  Q
    |||||||||||| |||| ||||| |||| |||||| |||||| ||  |||| |||||| |||||||||||||||| | ||  ||| ||||||||||||||    
T  23497075 tgtcctctaaccgctccctaatcacacg-tgcaaaacccggagacaattatcttcacgagcgcctatataagggtgactttgcttaaccctcaaggtatg 23497173  T
Q  177 attcatttttcacaacacttta 198  Q
    ||||| | ||||||||||||||    
T  23497174 attcactattcacaacacttta 23497195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 295
Target Start/End: Complemental strand, 13765126 - 13764951
Alignment:
Q  120 acggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattcc 219  Q
    ||||||||| |||||||||| ||| ||||||| | ||| ||||||| |||||  || ||||| ||| ||||||||||| | |||||||||||||| || |    
T  13765126 acggttattctcacgcgcgcttatttaagggtgacttagcttcaccttcaagacattattcactttacacaacactttctacacactctttctcagtttc 13765027  T
Q  220 attactgacttaagtgttagagtgctaacgtgcgtacagacatatttcgtctcattgcgaagactcatcaccacca 295  Q
    |||||| |||| |   || ||||  |||||||| | ||||||  ||||||| ||  |||||||||| |||||||||    
T  13765026 attactcacttgaacattggagtcttaacgtgcctgcagacacctttcgtcacaccgcgaagactcttcaccacca 13764951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 17927697 - 17927790
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||| |||||||||||||  ||||| |||||||| | || ||||  ||||| |||||||||||||||||| ||| ||||||||||||||    
T  17927697 cttcacccttaaggtatgattcacctttcataacactttctacatactcaatctcagttccattactgacttaagcgttggagtgctaacgtgc 17927790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 17698278 - 17698349
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||||||||||| |||| ||||| ||||||||||||||| | |||||||||||||  |||||||||||||||    
T  17698278 cttcaccctcaaagtataattcacttttcacaacactttctacacactctttctcggttccattactgactt 17698349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 24070945 - 24070866
Alignment:
Q  165 cctcaaggt-atgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtg 243  Q
    ||||||||| |||||||| || |||||||||||| | |||||||||||| | |||||||||||||||||||||| |||||    
T  24070945 cctcaaggttatgattcacttctcacaacactttctacacactctttcttagttccattactgacttaagtgttggagtg 24070866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 15058132 - 15058040
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||||||||||||||||||| ||||||||| ||||||| | |||| | |||||||||| ||||||| ||||  | |||  |||||||||||||    
T  15058132 ttcaccctcaaggtatgatttatttttcaccacactttctacacattttttctcaatttcattactaacttgtgcgttgtagtgctaacgtgc 15058040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 18323062 - 18322952
Alignment:
Q  138 gcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgtt 237  Q
    |||||||||||||| |  |  ||||| |||||| |||||||||| ||||||||||| ||| | |||| ||||||||| ||| ||||||||||| || |||    
T  18323062 gcctatataagggtgaccttgcttcatcctcaatgtatgattcacttttcacaacattttctacacaatctttctcagttctattactgacttgagcgtt 18322963  T
Q  238 agagtgctaac 248  Q
     ||||| ||||    
T  18322962 ggagtgttaac 18322952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 23269311 - 23269255
Alignment:
Q  192 cactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
    |||||| | |||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  23269311 cactttctacacactctttatcagttccattactgacttaagtgttggagtgctaac 23269255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 3459453 - 3459570
Alignment:
Q  135 cgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcac-aacactttatgcacactctttctcaattccattactgacttaag 233  Q
    ||||||||||||||||| |  |  ||||||| |||||||| |||| | ||||||| |||||||| | ||||||||| |||| ||||||||||||||| ||    
T  3459453 cgcgcctatataagggtgaacttgcttcacc-tcaaggtacgatttacttttcaccaacactttctacacactcttgctcagttccattactgacttgag 3459551  T
Q  234 tgttagagtgctaacgtgc 252  Q
     |   ||||||||||||||    
T  3459552 cgccggagtgctaacgtgc 3459570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 5859940 - 5859821
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||||||||||||||||||| |  |  |||||  ||||||||| |||||| || ||| |||||| |   |||||| ||||| | |||||||| ||||||     
T  5859940 acgcgcgcctatataagggtgaccttgcttcaatctcaaggtacgattcacttctcaaaacactctcaacacactatttcttagttccattattgacttg 5859841  T
Q  232 agtgttagagtgctaacgtg 251  Q
    || ||| |||||||||||||    
T  5859840 agcgttggagtgctaacgtg 5859821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 9135335 - 9135447
Alignment:
Q  140 ctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttag 239  Q
    |||||||||||| | ||  ||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||| || |||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagtttttacacactctttctcaattccattactgacttgagcgttag 9135434  T
Q  240 agtgctaacgtgc 252  Q
    |||||||||||||    
T  9135435 agtgctaacgtgc 9135447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 5863312 - 5863192
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    ||||||||||||| |||||| |  |  || |||||||||||||||||||| |||| |||||| ||| | |||||||||||||| ||| |||||||||||     
T  5863312 acgcgcgcctatacaagggtgacattgctccaccctcaaggtatgattcactttttacaacattttctacacactctttctcagttcgattactgacttg 5863213  T
Q  232 agtgttagagtgctaacgtgc 252  Q
    || ||| ||||||||||||||    
T  5863212 agcgtttgagtgctaacgtgc 5863192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 26762904 - 26762997
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||||||||||||| ||||||||||||||| | |||||| ||| | | |||| |||||||||| || ||| ||||||||||||||    
T  26762904 cttcaccctcaaggtatgattcacttttcacaacactttctacacactatttatgagttcctttactgacttgagcgttggagtgctaacgtgc 26762997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 9867938 - 9868023
Alignment:
Q  165 cctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgt 250  Q
    ||||||||||||||||| |||| |||||||||| | || |||||| |||| ||||||||||||||| || || |||||||||||||    
T  9867938 cctcaaggtatgattcacttttaacaacactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgt 9868023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 16987109 - 16987178
Alignment:
Q  183 ttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  16987109 ttttcacaacacttcttacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtgc 16987178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 16203920 - 16203768
Alignment:
Q  59 cgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaa 158  Q
    |||| ||||| |||||| |||||||||||| |||| ||||| |||||  | || | |||| ||||||||   | || || ||||||||||||| | ||      
T  16203920 cgaggatcaccctacacgtgtcctctaaccgctccctaatcacacgccacgaaacacggagacggttatcaacgcgagctcctatataagggtgactttt 16203821  T
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttc 211  Q
    ||||||||| |||||||| |||| |||||| |||||||||| |||||||||||    
T  16203820 cttcacccttaaggtatggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 29373569 - 29373473
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||||||||||| ||||| |  |  ||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||| ||  ||||||||    
T  29373569 gcgcgcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacacactctttctcaattacacaactgactt 29373473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 16204495 - 16204340
Alignment:
Q  53 tccatgcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggta 152  Q
    |||| ||||| ||||| |||||| |||||||||||| |||| ||||| |||||    || | |||| ||||||||   | || || |||||||||||||     
T  16204495 tccacgcgaggatcaccctacacgtgtcctctaaccgctccctaatcacacgccatgaaacacggagacggttatcaacgcgggctcctatataagggtg 16204396  T
Q  153 atttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactct 208  Q
    | ||  ||||||||| |||||||| |||| ||||||||||||||||| ||||||||    
T  16204395 aattttcttcacccttaaggtatggttcacttttcacaacactttatacacactct 16204340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 13292089 - 13292207
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||||||||||||||| ||| |  |  ||||||||||||||||    ||| ||||||||||||||  | |||||||||| ||| || ||||||||||||     
T  13292089 acgcgcgcctatataatggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttttcagtttcattactgacttg 13292188  T
Q  232 agtgttagagtgctaacgt 250  Q
    || ||||||||||||||||    
T  13292189 agcgttagagtgctaacgt 13292207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 7486643 - 7486550
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||| | |||| |||||||| |||||||||||| || | |||| ||||||||| |||||||||||| || || ||| ||||||||||||||    
T  7486643 cttcacctttaagggatgattcacttttcacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagtgctaacgtgc 7486550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 21161326 - 21161237
Alignment:
Q  172 gtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacagaca 261  Q
    |||||||||| ||||||||||||||| | ||||| |||||| |  |||||||||||||| || ||| |||||||||||||| | ||||||    
T  21161326 gtatgattcacttttcacaacactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagaca 21161237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 39879480 - 39879393
Alignment:
Q  164 ccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtg 251  Q
    |||||| || |||||||| |||| |||||||||| | |||||||||||||| || |||||||||||| || |||| |||| |||||||    
T  39879480 ccctcatggcatgattcactttttacaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtg 39879393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 10287564 - 10287682
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    ||||||||||||||||||||  |   | ||||||||||||||   ||| ||||||||||||||  | |||||| |||||||  |||||||||||||| ||    
T  10287564 gcgcgcctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttcttacacactttttctcagatccattactgacttgag 10287663  T
Q  234 tgttagagtgctaacgtgc 252  Q
     ||||  ||||||||||||    
T  10287664 cgttaaggtgctaacgtgc 10287682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 43172005 - 43172065
Alignment:
Q  135 cgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacact 195  Q
    ||||||||||||||||| |  |  |||||||||||| |||||||||| |||||||||||||    
T  43172005 cgcgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 5929028 - 5929097
Alignment:
Q  183 ttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||||  | ||| |||| | ||| ||||||||||||||| |||||| ||||||||| ||||    
T  5929028 ttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttggagtgctaatgtgc 5929097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 9573400 - 9573512
Alignment:
Q  139 cctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgtta 238  Q
    ||||||||||||| | ||| |||||||  ||| ||||||||||| |||| | ||||||  | |||||||||||||| ||||  || ||||||  | |||     
T  9573400 cctatataagggtgacttagcttcacctccaatgtatgattcatgtttc-ccacacttcttacacactctttctcagttcccatattgacttgtgcgttg 9573498  T
Q  239 gagtgctaacgtgc 252  Q
    ||||||||||||||    
T  9573499 gagtgctaacgtgc 9573512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 13159481 - 13159444
Alignment:
Q  136 gcgcctatataagggtaatttaacttcaccctcaaggt 173  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  13159481 gcgcctatataagggtgatttagcttcaccctcaaggt 13159444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 34854317 - 34854249
Alignment:
Q  183 ttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtg 251  Q
    ||||||||||| ||  | |||||||||||||| || ||||||| |||| || || ||||||||||||||    
T  34854317 ttttcacaacatttcttacacactctttctcagtttcattactaacttgagcgtcagagtgctaacgtg 34854249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 295
Target Start/End: Original strand, 45258021 - 45258281
Alignment:
Q  35 atcacacccgagcacggctccatgcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacg 134  Q
    |||||| || |||||| |||| |||||| ||||| || ||  |||||||||||| |||| ||||| ||||| ||||| | |||| ||||||||  |||||    
T  45258021 atcacatccaagcacgcctccgtgcgaggatcaccctgcatgtgtcctctaaccgctccctaatcacacgccgcaaaactcggagacggttatcgtcacg 45258120  T
Q  135 cgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagt 234  Q
     |  ||||||||||||| | ||  ||||||||||||||||||||||| |||||||||||||||   |||| ||||||| | || ||||||| |||| ||     
T  45258121 aggacctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcgacacattctttcttagtttcattacttacttgagc 45258220  T
Q  235 gttagagtgctaacgtgcgtacagacatatttcgtctcattgcgaagactcatcaccacca 295  Q
     || ||||| |||||||| | ||||||| ||||||  ||  ||||||||||||| ||||||    
T  45258221 tttggagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactcatcgccacca 45258281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 45715129 - 45715000
Alignment:
Q  123 gttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccatt 222  Q
    |||||| ||||||| || |||| |||||| | ||| ||||||| ||||||||||||||| ||||||| ||||||| | |||||||||||||| || ||||    
T  45715129 gttattctcacgcgtgcttatacaagggtgacttagcttcaccttcaaggtatgattcaattttcaccacactttttacacactctttctcagtttcatt 45715030  T
Q  223 actgacttaagtgttagagtgctaacgtgc 252  Q
    |||||||| || ||| ||||||||||||||    
T  45715029 actgacttgagcgttggagtgctaacgtgc 45715000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 3586488 - 3586368
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||||||||||||||||||| |  |  ||||||||||||||||||||||| ||||||||||||||| | | |||| ||||||| |||||||||||||||     
T  3586488 acgcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctactcactttttctcagttccattactgacttg 3586389  T
Q  232 agtgttagagtgctaacgtgc 252  Q
    || ||  |||| |||||||||    
T  3586388 agcgtcggagtcctaacgtgc 3586368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 24499887 - 24499796
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgt 250  Q
    ||||||||| ||||||||||||| ||||||||||| ||| | |||||||||||||| ||||||||||||||| || ||| ||||||||||||    
T  24499887 cttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagcgttggagtgctaacgt 24499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 36267596 - 36267507
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
    ||||||||||||||||||||||| |||||||||| |||| | |||||||||||||| || |||||||||||| || ||| ||||| ||||    
T  36267596 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactctttctcagtttcattactgacttgagcgttggagtgttaac 36267507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 287
Target Start/End: Original strand, 27846508 - 27846640
Alignment:
Q  155 ttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgt 254  Q
    ||||||||||||||||||||  ||||| ||| ||||||||||| | || ||| ||||||| ||||||||||||||| |  ||| |||||||||||||| |    
T  27846508 ttaacttcaccctcaaggtacaattcactttacacaacactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcct 27846607  T
Q  255 acagacatatttcgtctcattgcgaagactcat 287  Q
     ||| ||  |||||||  | |||||||||||||    
T  27846608 gcaggcacttttcgtccaactgcgaagactcat 27846640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 12169071 - 12169000
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||| | |||||||||||||||    
T  12169071 cttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagttccattactgactt 12169000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 19919036 - 19919147
Alignment:
Q  136 gcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtg 235  Q
    ||||||||||||| || || |  ||||| ||||||||||||||||| ||||||||||||||| | || ||||||||||| |||||||| ||||||  | |    
T  19919036 gcgcctatataagagtgatattgcttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctcatttccattattgactttggcg 19919135  T
Q  236 ttagagtgctaa 247  Q
    ||||||| ||||    
T  19919136 ttagagttctaa 19919147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 269
Target Start/End: Complemental strand, 15825279 - 15825142
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    ||||||||||||| |||||| |  |  ||||||||||||||||    | | ||||||||||||||| | |||||||||||||| ||||||||| |||||     
T  15825279 acgcgcgcctatacaagggtgaacttgcttcaccctcaaggtacacatgacttttcacaacactttctacacactctttctcagttccattaccgacttg 15825180  T
Q  232 agtgttagagtgctaacgtgcgtacagacatatttcgt 269  Q
    || || | ||||||||||||| | |||||| |||||||    
T  15825179 agcgtcaaagtgctaacgtgcctgcagacacatttcgt 15825142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 18770388 - 18770319
Alignment:
Q  183 ttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||| || || |||||||||||||||    
T  18770388 ttttcacaacactttctacacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgc 18770319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 20120441 - 20120343
Alignment:
Q  163 accctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacagaca 261  Q
    ||||||||||||||||||| || ||||| ||||||   |||||||||||||| || |||||||||||| || ||  |||||||||||||| | ||||||    
T  20120441 accctcaaggtatgattcacttatcacaccactttccacacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagaca 20120343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 294
Target Start/End: Original strand, 12127656 - 12127791
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacag 258  Q
    |||||||  ||| |||||||||| ||||||||||||||| | ||||| | |||| | || |||||||||||| || ||| |||||||||||||| | |||    
T  12127656 cttcaccaccaaagtatgattcacttttcacaacactttctacacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctgcag 12127755  T
Q  259 acatatttcgtctcattgcgaagactcatcaccacc 294  Q
      |  ||||||| ||  |||||||| ||||||||||    
T  12127756 gtacctttcgtcccaccgcgaagacccatcaccacc 12127791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 294
Target Start/End: Original strand, 10923158 - 10923293
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacag 258  Q
    |||||||||||||| |   |||| |||||||| |||||| | |||||||||| | | |||||| |||||||| |||||  ||||| |||||||| ||||     
T  10923158 cttcaccctcaaggcacacttcacttttcacagcactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacat 10923257  T
Q  259 acatatttcgtctcattgcgaagactcatcaccacc 294  Q
    |||  ||||||  ||  ||||||||| |||||||||    
T  10923258 acacctttcgttccaccgcgaagactaatcaccacc 10923293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 18134419 - 18134349
Alignment:
Q  158 acttcaccctcaaggtatgattcatttttcacaacac--tttatgcacactctttctcaattccattactg 226  Q
    |||||||||||||||||  ||||||||||||||| ||  ||| | || |||||||||||||||||||||||    
T  18134419 acttcaccctcaaggtacaattcatttttcacaatactttttctacatactctttctcaattccattactg 18134349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 29711139 - 29711023
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    |||||||||||||||||| |  |  ||||||||||||||||    ||| ||||||||||||||  | ||| |||||||  |||||||||| |||||| ||    
T  29711139 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcgtacactctctttc--aattccattagtgacttgag 29711042  T
Q  234 tgttagagtgctaacgtgc 252  Q
     ||| ||||||||||||||    
T  29711041 cgttggagtgctaacgtgc 29711023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 18135992 - 18135870
Alignment:
Q  136 gcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtg 235  Q
    |||||||||||||||| |  |  ||||||| || ||||||   ||| |||| |||||||||  | |||||||||||||| |||||||||| |||| || |    
T  18135992 gcgcctatataagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccattactaacttgagcg 18135893  T
Q  236 ttagagtgctaacgtgcgtacag 258  Q
    | ||||| ||||||||| |||||    
T  18135892 tcagagtactaacgtgcctacag 18135870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 15390551 - 15390671
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||||||||||||||||||| |  |  ||||||||||||||||    ||| ||||||||||||||  | |||||| ||| | | |||||| ||| ||||     
T  15390551 acgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactgtttattagttccatcacttacttg 15390650  T
Q  232 agtgttagagtgctaacgtgc 252  Q
    || || | |||||||||||||    
T  15390651 agcgtcaaagtgctaacgtgc 15390671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 47 - 257
Target Start/End: Complemental strand, 5671980 - 5671770
Alignment:
Q  47 cacggctccatgcgagaatcactctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcac-gcgcgcctatat 145  Q
    |||| ||||| ||||| ||||| ||| ||||||||||| ||| ||||| |||| |||| |||||| |  |||   |||||||||||  ||||| ||||||    
T  5671980 cacgtctccacgcgaggatcaccctatacatgtcctcttaccgctcct-aatcacacgatgcaaaacttggacgtggttattttcaatgcgcgtctatat 5671882  T
Q  146 aagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgct 245  Q
    ||| || | ||||||||||| |||| |||||||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| || ||| |||||||    
T  5671881 aagagtgacttaacttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagttccattactaacttgagcgttggagtgct 5671782  T
Q  246 aacgtgcgtaca 257  Q
    ||||||| ||||    
T  5671781 aacgtgcctaca 5671770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 252
Target Start/End: Complemental strand, 26977864 - 26977745
Alignment:
Q  133 cgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaa 232  Q
    ||||||||||||||||||| |  |  ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||  ||||||||||||||| |    
T  26977864 cgcgcgcctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctcggttccattactgacttga 26977765  T
Q  233 gtgttagagtgctaacgtgc 252  Q
    | ||| ||||||||||||||    
T  26977764 gcgttggagtgctaacgtgc 26977745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 12177478 - 12177391
Alignment:
Q  165 cctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||| ||||| ||||||||||||||| | |||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  12177478 cctcaaggtataattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaacgtgc 12177391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 52565678 - 52565586
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtg 251  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| |||||||| ||| |||| |||||||||| || || ||||||||||||||    
T  52565678 cttcaccctcaagttatgattcacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtg 52565586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 16030529 - 16030422
Alignment:
Q  123 gttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccatt 222  Q
    ||||| |||| | ||||||||||||||||   ||| |||| |||||||||||||||||| ||||||||||||||| | |||||||||  ||| |||||||    
T  16030529 gttatcttcatgtgcgcctatataagggtggcttagcttcgccctcaaggtatgattcacttttcacaacactttctacacactcttattcagttccatt 16030430  T
Q  223 actgactt 230  Q
    ||||||||    
T  16030429 actgactt 16030422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 252
Target Start/End: Complemental strand, 34273273 - 34273092
Alignment:
Q  70 ctacacatgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctca 169  Q
    |||||||||||||||||||  |||| || | ||||| ||||| || |||  ||||||||  || || | ||||||||||||  |  |  |||||||||||    
T  34273273 ctacacatgtcctctaaccgttcct-aaccgcacgccgcaaaacctggaggcggttattcccaagcacacctatataagggcgacattgcttcaccctca 34273175  T
Q  170 aggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||||||| ||| ||| ||||||||||| | |||||||||||||| |||| |||||||||| ||  || ||||||||||||||    
T  34273174 aggtatgagtcactttacacaacactttctacacactctttctcagttccgttactgacttgagcattggagtgctaacgtgc 34273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 22414873 - 22414780
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||| ||||||||| ||||||||||||||| | |||||| ||| ||| || |||||||||||| || || |||||||||||||||    
T  22414873 cttcaccctcaagatatgattcacttttcacaacactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgc 22414780  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 294
Target Start/End: Complemental strand, 18246257 - 18246106
Alignment:
Q  142 atataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagag 241  Q
    |||||||||| | ||| ||||||||||||||||||| ||| ||||| || |||||| |  ||||||||||||||||| | |||| |||| || ||| |||    
T  18246257 atataagggtgacttatcttcaccctcaaggtatgaatcacttttctca-cactttttatacactctttctcaattctaatactcacttgagcgttggag 18246159  T
Q  242 tgctaacgtgcgtacagacatatttcgtctcattgcgaagactcatcaccacc 294  Q
    || |||||||| ||||||||  ||||||  ||  || ||||||||||||||||    
T  18246158 tgttaacgtgcttacagacacctttcgttccaccgccaagactcatcaccacc 18246106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 16050492 - 16050399
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||| |||||||||||| |||| ||||||| ||||||| | |||||||||||||| |||||| | |||||| || ||| ||||||||||||||    
T  16050492 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgc 16050399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 33101501 - 33101593
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||||||||||| || | |||| ||||||||||||||| | |||||| ||||||| ||||||||| ||||| || ||| ||||||||||||||    
T  33101501 ttcaccctcaagttacggttcacttttcacaacactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgc 33101593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 12032166 - 12032301
Alignment:
Q  77 tgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatg 176  Q
    |||| ||||||| ||| |||||  ||| | ||||| ||| || ||||||||| ||  |||||||||||||||||| | |||  |||||| ||||| ||||    
T  12032166 tgtcatctaaccgctctttaattgcacaccgcaaatccctgatacggttattctc--gcgcgcctatataagggtgacttagtttcacc-tcaagttatg 12032262  T
Q  177 attcatttttcacaacactttatgcacactctttctcaa 215  Q
    ||||||||| ||||||||||| | |||||||||||||||    
T  12032263 attcattttacacaacactttctacacactctttctcaa 12032301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 5459620 - 5459757
Alignment:
Q  77 tgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatg 176  Q
    |||||| ||||  |||| ||||| ||||| ||||| | |||  ||||||||| ||||||||| |||| | ||| | | ||||||||| || ||| |||||    
T  5459620 tgtcctttaactgctccctaatcacacgccgcaaaacacggtgacggttattctcacgcgcgtctatgttaggctgacttaacttcatccccaatgtatg 5459719  T
Q  177 attcatttttcacaacactttatgcacactctttctca 214  Q
    ||||| ||| ||||||||||| | ||||||||||||||    
T  5459720 attcactttacacaacactttctacacactctttctca 5459757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 2140904 - 2140992
Alignment:
Q  122 ggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactcttt 210  Q
    ||||||| ||||||||| || ||||||||| | ||| |||||||||||||||||| |||| ||| ||||||||||| | |||| |||||    
T  2140904 ggttattctcacgcgcgtctttataagggtgacttagcttcaccctcaaggtatggttcactttccacaacactttctacacattcttt 2140992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 23280255 - 23280342
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
    ||||||||||| || || ||||| ||||||||||||| ||  ||||| |||||||| ||||||||||||||| || ||| ||||| ||||    
T  23280255 cttcaccctcatggcattattcacttttcacaacactata--cacacactttctcagttccattactgacttgagagtttgagtgataac 23280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 8019090 - 8019018
Alignment:
Q  115 cggaaacggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttc 187  Q
    |||| ||||||||| |||| | ||||||||||||||| |  || |||||||| |||||||||||||| |||||    
T  8019090 cggagacggttattctcacacacgcctatataagggtgacatagcttcacccccaaggtatgattcacttttc 8019018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 23728814 - 23728906
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||||||||||||||    ||| ||||||||||||||  | |||||||||||||| |||||||| |||||| || || | | |||||||||||    
T  23728814 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagcgtcataatgctaacgtgc 23728906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 2612638 - 2612684
Alignment:
Q  140 ctatataagggtaatttaacttcaccctcaaggtatgattcattttt 186  Q
    |||||||||||| | ||| ||||| ||||||||||||||||||||||    
T  2612638 ctatataagggtgagttagcttcatcctcaaggtatgattcattttt 2612684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 248
Target Start/End: Complemental strand, 30607108 - 30606937
Alignment:
Q  77 tgtcctctaaccactccttaatctcacgctgcaaaccccggaaacggttatt-ttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtat 175  Q
    ||||||||||||  ||| ||||| ||||| || || |||||| || |||||| || ||||||||||||||||||||    | ||||||||||||||||||    
T  30607108 tgtcctctaaccg-tccctaatcacacgcggcgaaacccggagacagttattcttaacgcgcgcctatataagggtggccttacttcaccctcaaggtat 30607010  T
Q  176 gattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
     ||||| ||||||||||||||| | | |||||||||||||||||||||||||||| || ||| || |||||||    
T  30607009 aattcacttttcacaacactttctactcactctttctcaattccattactgacttgagcgttggaatgctaac 30606937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 16704527 - 16704407
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    |||||||||||||||||||| |  |  ||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||| ||||||||||||||     
T  16704527 acgcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactctctttctcaactccattactgacttc 16704428  T
Q  232 agtgttagagtgctaacgtgc 252  Q
    || ||| || ||| |||||||    
T  16704427 agcgttggaatgccaacgtgc 16704407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 9801056 - 9801169
Alignment:
Q  138 gcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgtt 237  Q
    |||||||||||||| |  |  ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||  ||| ||||||||||| ||||||    
T  9801056 gcctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctctgttctattactgacttgagtgtt 9801155  T
Q  238 agagtgctaacgtgc 252  Q
     ||||||||||||||    
T  9801156 -gagtgctaacgtgc 9801169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 28715482 - 28715551
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgact 229  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  28715482 ttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttccattactgact 28715551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 17143743 - 17143835
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||| |||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||| || ||  ||||||||||||||    
T  17143743 ttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgtcggagtgctaacgtgc 17143835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 21342260 - 21342351
Alignment:
Q  139 cctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    |||||||||||||||  | ||||||||||||| |||||||||| ||||||||||||||| |  ||||||||| ||| |||||||||||||||    
T  21342260 cctatataagggtaaccttacttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttccattactgactt 21342351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 2311827 - 2311918
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgt 250  Q
    |||||||||||||||||||||||  |||||||||||||| | |||| |||||||||| ||| || |||| || || ||| ||||||||||||    
T  2311827 cttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctcaaatcccttgctgatttgagcgttggagtgctaacgt 2311918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 17485617 - 17485744
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtacag 258  Q
    ||||||||||||||||  ||||||||| ||||||| | | | ||||||| |||||||||||||||||||||| || ||| | ||||||| ||||  ||||    
T  17485617 cttcaccctcaaggtactattcattttacacaacattctctacacactccttctcaattccattactgacttgagcgttggggtgctaatgtgcccacag 17485716  T
Q  259 acatatttcgtctcattgcgaagactca 286  Q
    |||  ||||||  ||  |||||||||||    
T  17485717 acacctttcgttccaccgcgaagactca 17485744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 6109650 - 6109744
Alignment:
Q  163 accctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtaca 257  Q
    ||||||||| | ||||||| ||||||||||||||| |  ||| |  || ||| ||| |||||||||||||||||| |||||||||||||| ||||    
T  6109650 accctcaagatgtgattcacttttcacaacactttctttacatttgttttcagttcgattactgacttaagtgttggagtgctaacgtgcctaca 6109744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 8122908 - 8123000
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||||||||||||| |||||||||| ||||   || | | ||| |||||| |||||||||||| || ||| ||||||||||||||    
T  8122908 cttcaccctcaaggtatgattcacttttcacaacgctttcgacatagt-tttttcaatttcattactgacttgagcgttggagtgctaacgtgc 8123000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 20622506 - 20622433
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacacttta--tgcacactctttctcaattccattactgactt 230  Q
    ||||||||||||||||||||||| |||||||| |||||||  | |||||| |||||| ||  ||||||||||||    
T  20622506 cttcaccctcaaggtatgattcacttttcacaccactttatctacacactatttctctatctcattactgactt 20622433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 12516283 - 12516191
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtg 251  Q
    ||||||||||||||||    ||| ||||||||||||||  | |||| ||||||||| |||||||||| |||| || ||  |||||||||||||    
T  12516283 cttcaccctcaaggtacatatcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtg 12516191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 28723768 - 28723860
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||| || || |||||| ||||||||||| ||| | |||||||||||| | |||||||| |||||| || ||| || ||| |||||||    
T  28723768 ttcaccctccagatacgattcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgttggattgccaacgtgc 28723860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 14860067 - 14860185
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    |||||||||||||||||| |  |  ||||||||||||||||    ||| ||||||||||||||  | || ||| ||||||| |||||||||||| || ||    
T  14860067 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgag 14860166  T
Q  234 tgttagagtgctaacgtgc 252  Q
      | |||||||||| ||||    
T  14860167 aatcagagtgctaatgtgc 14860185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 30429854 - 30429916
Alignment:
Q  120 acggttattttcac-gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattca 181  Q
    |||||||||||||| ||||||||||||||| || | ||| ||||||||| || ||||||||||    
T  30429854 acggttattttcacagcgcgcctatataagagtgacttagcttcacccttaaagtatgattca 30429916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 12252062 - 12251997
Alignment:
Q  183 ttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
    ||||||||||| ||  | |||||||||||||| || | |||||||||| ||||| |||||||||||    
T  12252062 ttttcacaacaattcttacacactctttctcattttcgttactgacttgagtgtcagagtgctaac 12251997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 431309 - 431401
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtg 251  Q
    |||||||||||||| |  ||||| |||||||| ||||||   | |||||||||||| |||||||| |||||| || ||   ||||||||||||    
T  431309 cttcaccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccattattgacttgagcgtcgaagtgctaacgtg 431401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 120979 - 121096
Alignment:
Q  134 gcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaag 233  Q
    |||||||||||||||||| | ||  ||||||||||||||||    ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  120979 gcgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccattactgacttaag 121078  T
Q  234 tgttagagtgctaacgtg 251  Q
      | ||||| ||||||||    
T  121079 catcagagtactaacgtg 121096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 379814 - 379721
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||||||    ||| ||||||||||||||  | |||||||||||||| ||||||||||||||| ||||| | |||||||||||||    
T  379814 cttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccattactgacttcagtgtcaaagtgctaacgtgc 379721  T

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Target: scaffold0505 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 7982 - 7885
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgcgtaca 257  Q
    ||||| |||||  ||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||| || || |||||||||||||||||| ||||    
T  7982 ttcacactcaaattatgattcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctaca 7885  T

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Target: scaffold0360 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 14040 - 13927
Alignment:
Q  139 cctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgtta 238  Q
    ||||||||||||| || |  ||||||||||||||||||||||| || |||||||||||| | |||||||||||||| || |||||||||||| ||  ||     
T  14040 cctatataagggtgatcttgcttcaccctcaaggtatgattcacttctcacaacactttctacacactctttctcagtttcattactgacttgagctttg 13941  T
Q  239 gagtgctaacgtgc 252  Q
    |||| |||||||||    
T  13940 gagtactaacgtgc 13927  T

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Target: scaffold0291 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 15423 - 15515
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtg 251  Q
    ||||||||||||||||||||||| ||||||||||||||| |  | ||||||||||| ||||||||||||||  || ||  |||||||||||||    
T  15423 cttcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagttccattactgactggagcgtcggagtgctaacgtg 15515  T

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Target: scaffold0291; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 8516 - 8663
Alignment:
Q  102 acgctgcaaaccccggaaacggttattttca-cgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatg 200  Q
    |||||||| | |||||| ||||||||  ||| ||||||||||||||||||| |    | |||||||| ||||||||||||| ||||||||||||||| |     
T  8516 acgctgcataacccggagacggttatgctcaacgcgcgcctatataagggtga----agttcacccttaaggtatgattcacttttcacaacactttcta 8611  T
Q  201 cacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||||| ||| ||| || |||||||||||| || ||   |||||||||||||    
T  8612 cacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtgc 8663  T

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Target: scaffold0054 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 68768 - 68885
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    ||||| |||||||||||||| |  |  |||| |||||||||||||||||| ||||||||||||||| |  | ||||||||||| |||||||||| ||||     
T  68768 acgcgtgcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacactttct--atactctttctcagttccattactaacttg 68865  T
Q  232 agtgttagagtgctaacgtg 251  Q
    || ||| |||||||||||||    
T  68866 agcgttggagtgctaacgtg 68885  T

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Target: scaffold0023 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 95776 - 95896
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    ||||| |||||||||||||| |  |  ||||||||| ||||||||||||| ||||||||||||||| | | |||||||||||| |||||||||| ||||     
T  95776 acgcgtgcctatataagggtgacgttgcttcaccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttccattactaacttg 95875  T
Q  232 agtgttagagtgctaacgtgc 252  Q
    || |||  |||| ||||||||    
T  95876 agcgttgaagtggtaacgtgc 95896  T

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Target: scaffold0074 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 35373 - 35258
Alignment:
Q  138 gcctatataagggtaatttaacttcaccctcaaggtatgattca-tttttcacaacactttatgcacactctttctcaattccattactgacttaagtgt 236  Q
    ||||||||||||||||     |||| ||||||| | |||||||| ||||||||||||||||   |||||||||||||| |||| |||||||||| |||||    
T  35373 gcctatataagggtaaagccgcttccccctcaaaggatgattcactttttcacaacactttccacacactctttctcagttccgttactgacttgagtgt 35274  T
Q  237 tagagtgctaacgtgc 252  Q
     |||||||||||||||    
T  35273 cagagtgctaacgtgc 35258  T

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Target: scaffold0140 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 6443 - 6325
Alignment:
Q  113 cccggaaacggttattttca-cgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttc 211  Q
    |||||| |||||||| |||| || |||||||||||||| | |  |  |||||| ||||||||| || ||| ||||||||||||||| | |||||| ||||    
T  6443 cccggagacggttatgttcaacgtgcgcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatttc 6344  T
Q  212 tcaattccattactgactt 230  Q
    ||| |||||||||||||||    
T  6343 tcagttccattactgactt 6325  T

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Target: scaffold0294 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 208 - 326
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgat-tcatttttcacaacactttatgcacactctttctcaattccattactgactt 230  Q
    ||||||||||| |||||||| |  |  ||||||||||||||||   | ||| ||||||||||||||  | |||||||||||||| |||||||||||||||    
T  208 acgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttcacaacacttcttacacactctttctcagttccattactgactt 307  T
Q  231 aagtgttagagtgctaacg 249  Q
     || ||  |||||||||||    
T  308 gagcgtcggagtgctaacg 326  T

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Target: scaffold0205 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 22984 - 22891
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    ||||||||||||||||    ||| ||||||||||||||  | |||||  ||||||| ||||||||||||||| || || |||||||||||||||    
T  22984 cttcaccctcaaggtacacgtcacttttcacaacacttcttacacacgatttctcagttccattactgacttgagcgtcagagtgctaacgtgc 22891  T

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Target: scaffold0205; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 10909 - 11001
Alignment:
Q  160 ttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaacgtgc 252  Q
    |||||||||||||||    ||| ||||||||||||||  | |||||||| | ||| |||||||| |||||| || ||| ||||||||||||||    
T  10909 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccattattgacttgagcgttggagtgctaacgtgc 11001  T

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Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 73795 - 73884
Alignment:
Q  159 cttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgacttaagtgttagagtgctaac 248  Q
    ||||||||| ||||||||||| | ||||||||||||||| | | |||||||| |||| ||||||||| | || || || |||||||||||    
T  73795 cttcaccctgaaggtatgatttacttttcacaacactttctacgcactctttttcaaatccattactaatttgagcgtcagagtgctaac 73884  T

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Target: scaffold0263 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 20463 - 20579
Alignment:
Q  132 acgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattccattactgactta 231  Q
    ||||||||||||||| |||| | || | ||||||| |||||||    ||| |||||| |||| ||| | |||||||||||||| |||| ||| ||||||     
T  20463 acgcgcgcctatatatgggtgaatttatttcacccacaaggtacacatcacttttcataacattttctacacactctttctcagttcctttagtgacttg 20562  T
Q  232 agtgttagagtgctaac 248  Q
    || || |||||||||||    
T  20563 agcgtcagagtgctaac 20579  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 149264 - 149217
Alignment:
Q  139 cctatataagggtaatttaacttcaccctcaaggtatgattcattttt 186  Q
    ||||||||||||| | |||||||||||| |||||||||||||| ||||    
T  149264 cctatataagggtgacttaacttcacccccaaggtatgattcactttt 149217  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 18426 - 18551
Alignment:
Q  121 cggttattttcacgcgcgcctatataagggtaatttaacttcaccctcaaggtatgattcatttttcacaacactttatgcacactctttctcaattcca 220  Q
    |||||||| |||| | | ||||||||||||| | ||| ||||| ||  ||||||||||||||||||  | ||||||| | ||||||| |||| | | ||     
T  18426 cggttattctcacacacacctatataagggtgacttagcttcaacccgaaggtatgattcattttt-tctacactttgtacacactccttcttattccct 18524  T
Q  221 ttactgacttaagtgttagagtgctaa 247  Q
     ||||||||| |||||| |||||||||    
T  18525 atactgacttgagtgttggagtgctaa 18551  T

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