View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_138 (Length: 299)

Name: NF9005_low_138
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_138
NF9005_low_138
[»] chr1 (1 HSPs)
chr1 (1-299)||(46871153-46871451)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 46871153 - 46871451
Alignment:
Q  1 acttcattcaaaatctattcttttcttttatgaagaaaaaatttgtggtannnnnnncccacctaagttccctccattatttgaggaatgtcgaccaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  46871153 acttcattcaaaatctattcttttcttttatgaagaaaaaatttgtggtatttttttcccacctaagttccctccattatttgaggaatgtcgaccaagg 46871252  T
Q  101 ccgttccaataattttcaacagttagtgaagtttaagacaaattttgaaagaaggttgctctatatgcctttgagattgttcaacccttgnnnnnnngtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  46871253 ccgttccaataattttcaacagttagtgaagtttaagacaaattttgaaagaaggttgctctatatgcctttgagattgttcaacccttgaaaaaaagtc 46871352  T
Q  201 gatcaaaacctatcccccgattgatttgtggtgtcgcaagatacgttccgataaattaaggggttagtaaacactatatggcgatttccaaaattccat 299  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46871353 gatcaaaacctatcccccaattgatttgtggtgtcgcaagatacgttccgataaattaaggggttagtaaatactatatggcgatttccaaaattccat 46871451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University