View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_14 (Length: 693)

Name: NF9005_low_14
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_14
NF9005_low_14
[»] chr8 (6 HSPs)
chr8 (418-676)||(29157723-29157981)
chr8 (43-327)||(29158072-29158353)
chr8 (56-108)||(12123239-12123291)
chr8 (1-51)||(29158670-29158720)
chr8 (192-280)||(43884199-43884284)
chr8 (92-137)||(35464868-35464913)
[»] chr2 (1 HSPs)
chr2 (499-651)||(28624755-28624907)
[»] chr3 (6 HSPs)
chr3 (487-561)||(11982143-11982217)
chr3 (487-561)||(18770394-18770468)
chr3 (446-488)||(11981432-11981474)
chr3 (446-488)||(18771137-18771179)
chr3 (57-137)||(2055431-2055509)
chr3 (56-113)||(54254076-54254133)
[»] chr7 (3 HSPs)
chr7 (56-135)||(47819401-47819483)
chr7 (56-137)||(2886247-2886328)
chr7 (56-137)||(19568397-19568477)
[»] chr6 (1 HSPs)
chr6 (80-136)||(11626924-11626980)
[»] scaffold0050 (1 HSPs)
scaffold0050 (56-97)||(58404-58445)
[»] chr5 (2 HSPs)
chr5 (58-135)||(27719563-27719640)
chr5 (56-135)||(4854291-4854368)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 418 - 676
Target Start/End: Complemental strand, 29157981 - 29157723
Alignment:
Q  418 gatcgactcaaaggtatacttaacataagtataatgtttttccaacatgtagatgaacaaaatcatataaaactaccactgcatagactaaatcaaataa 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29157981 gatcgactcaaaggtatacttaacataagtataatgtttttccaacatgtagatgaacaaaatcatataaaactaccactacatagactaaatcaaataa 29157882  T
Q  518 tccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaacatttatctttttgccacactgctttaccaaagaattaa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157881 tccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaacatttatctttttgccacactgctttaccaaagaattaa 29157782  T
Q  618 actaacagcctctacgggagtagtaaattagacatagactcattatgaaaaccactact 676  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  29157781 actaacagcctctacgggagtagtaaattagacatagacccattacgaaaaccactact 29157723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 43 - 327
Target Start/End: Complemental strand, 29158353 - 29158072
Alignment:
Q  43 tatacagttttatgactacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattcagaaaa 142  Q
    |||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29158353 tatatagtttaatgactacttattatatttaca--ggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattcagaaaa 29158256  T
Q  143 aagtttgactgtagtnnnnnnnnncactactgtagtggttgcttcttgacaataatggttaatttcttcatctgaaaacaacaaaattggaggtcacagg 242  Q
    |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29158255 aagtttgactgtagtaaaaaaaa-cactactgtagtggttgcttcttgacaataatggttaatttcttcatctgaaaacaacaaaattggaggtcacagg 29158157  T
Q  243 ttctgaatgaatccttgcagctgaatgttgatattcaaatatcaaccaaagactaacctgaatatattgctaaaggagaatcatt 327  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29158156 ttctaaatgaatccttgcagctgaatattgatattcaaatattaaccaaagactaacctgaatatattgctaaaggagaatcatt 29158072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 12123239 - 12123291
Alignment:
Q  56 gactacttattatatttacataggttagggactaaattgaagaaagagtgata 108  Q
    |||||||||| |||||||||||| |||||||||||||||||||| | ||||||    
T  12123239 gactacttatcatatttacatagtttagggactaaattgaagaatgggtgata 12123291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29158720 - 29158670
Alignment:
Q  1 ggtagtatcttaagtcttaacttacactagattgacaagttttatacagtt 51  Q
    |||||||||||| || ||||||| |||||||||||||||||||||| ||||    
T  29158720 ggtagtatcttatgttttaacttgcactagattgacaagttttatatagtt 29158670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 43884284 - 43884199
Alignment:
Q  192 caataatggttaatttcttcatctgaaaacaacaaaattggaggtcacaggttctgaatgaatccttgcagctgaatgttgatattcaa 280  Q
    |||| |||||| |||||||||||||||| |||   |||||||| ||||| ||| | ||| |||| |||||||||||| ||||| |||||    
T  43884284 caatgatggtttatttcttcatctgaaaccaa---aattggagttcacaagttgtaaattaatcgttgcagctgaatcttgatgttcaa 43884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 35464868 - 35464913
Alignment:
Q  92 ttgaagaaagagtgatactttagggtctaaactgatggtttattca 137  Q
    ||||||||||||||||| ||||| | ||||| ||||||||||||||    
T  35464868 ttgaagaaagagtgatattttagagactaaattgatggtttattca 35464913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 499 - 651
Target Start/End: Original strand, 28624755 - 28624907
Alignment:
Q  499 catagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaacatttatctttttgccacac 598  Q
    |||||| ||||||||| ||||||| ||||   ||||||||||||||| ||||||||||||||  |||| || ||||||||||||| ||||||| ||||||    
T  28624755 catagattaaatcaaagaatccacaaatgctgaaacaagcaagatgattagacatccattgagcaatcaaatatttgaaacatttttctttttcccacac 28624854  T
Q  599 tgctttaccaaagaattaaactaacagcctctacgggagtagtaaattagaca 651  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28624855 tgctttaccaaagaattaaactaacagcctgtacgggagtagtaaattagaca 28624907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 487 - 561
Target Start/End: Original strand, 11982143 - 11982217
Alignment:
Q  487 aaactaccactgcatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa 561  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11982143 aaactaccactgcataaactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa 11982217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 18770468 - 18770394
Alignment:
Q  487 aaactaccactgcatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa 561  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18770468 aaactaccactgcataaactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa 18770394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 11981432 - 11981474
Alignment:
Q  446 gtataatgtttttccaacatgtagatgaacaaaatcatataaa 488  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  11981432 gtataacgtttttccaacatgtagatgaacaaaatcatataaa 11981474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 488
Target Start/End: Complemental strand, 18771179 - 18771137
Alignment:
Q  446 gtataatgtttttccaacatgtagatgaacaaaatcatataaa 488  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  18771179 gtataacgtttttccaacatgtagatgaacaaaatcatataaa 18771137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 2055509 - 2055431
Alignment:
Q  57 actacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattca 137  Q
    |||||||||||| | || |||| ||||||||||||||  |||| || ||||| |||| || ||||| ||||||||||||||    
T  2055509 actacttattatttatatatagtttagggactaaatt--agaatgaatgatagtttaaggactaaattgatggtttattca 2055431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 54254076 - 54254133
Alignment:
Q  56 gactacttattatatttacataggttagggactaaattgaagaaagagtgatacttta 113  Q
    |||||||||||||||||| | |  ||||||||||||||| ||| ||||||||| ||||    
T  54254076 gactacttattatatttatacactttagggactaaattggagagagagtgatagttta 54254133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 47819401 - 47819483
Alignment:
Q  56 gactacttattatatttacataggttagggactaaattgaagaa---agagtgatactttagggtctaaactgatggtttatt 135  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   | ||| ||| ||||||| ||||  ||||||||||||    
T  47819401 gactacttattatatttacatagtttagggactaaattgaagaagagatagtcatagtttagggactaacttgatggtttatt 47819483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 2886328 - 2886247
Alignment:
Q  56 gactacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattca 137  Q
    ||||| |||||||||||  |||| ||||||  ||||||||||  ||||||||| |||| || ||| | ||||||||||||||    
T  2886328 gactatttattatatttttatagtttaggggataaattgaagggagagtgatagtttaaggactatattgatggtttattca 2886247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 19568477 - 19568397
Alignment:
Q  56 gactacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattca 137  Q
    ||||| ||| |||||||  |||||| |||||||||| |||||| ||||||||| ||||||| ||||  |||||||| |||||    
T  19568477 gactatttagtatatttttataggt-agggactaaagtgaagagagagtgatagtttagggactaagttgatggttcattca 19568397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 11626924 - 11626980
Alignment:
Q  80 ttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattc 136  Q
    ||||| ||||||||||||| ||||||||||||||||  ||| | |||||||||||||    
T  11626924 ttaggaactaaattgaagagagagtgatactttaggagctacattgatggtttattc 11626980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 58404 - 58445
Alignment:
Q  56 gactacttattatatttacataggttagggactaaattgaag 97  Q
    |||||| |||||||||||||||| ||||||||||| ||||||    
T  58404 gactacctattatatttacatagtttagggactaatttgaag 58445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 27719640 - 27719563
Alignment:
Q  58 ctacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttatt 135  Q
    |||||| ||||||||| |||| ||||||||||||||| ||| ||| ||||| | ||||| ||||  ||||| ||||||    
T  27719640 ctacttgttatatttatatagtttagggactaaattggagagagaatgatagtatagggactaagttgatgctttatt 27719563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 4854291 - 4854368
Alignment:
Q  56 gactacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttatt 135  Q
    ||||| |||||||||||| |||  |||||||| |||||| |||  ||||||||||||| ||  |||| ||||||||||||    
T  4854291 gactatttattatatttatatactttagggaccaaattggaga--gagtgatactttatggattaaattgatggtttatt 4854368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University