View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_141 (Length: 297)

Name: NF9005_low_141
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_141
NF9005_low_141
[»] chr7 (4 HSPs)
chr7 (228-297)||(21253840-21253909)
chr7 (19-66)||(41890531-41890578)
chr7 (1-66)||(42060660-42060725)
chr7 (10-66)||(28081793-28081849)
[»] chr4 (6 HSPs)
chr4 (1-66)||(44170621-44170686)
chr4 (10-66)||(49768880-49768936)
chr4 (10-66)||(48722073-48722129)
chr4 (19-62)||(6239388-6239431)
chr4 (1-66)||(40721966-40722031)
chr4 (10-66)||(49424831-49424887)
[»] chr8 (3 HSPs)
chr8 (19-66)||(11114689-11114736)
chr8 (1-66)||(38504174-38504239)
chr8 (10-66)||(10184137-10184193)
[»] chr2 (1 HSPs)
chr2 (1-66)||(1298198-1298263)
[»] chr1 (8 HSPs)
chr1 (10-67)||(43056719-43056776)
chr1 (19-62)||(1156487-1156530)
chr1 (10-61)||(32196647-32196698)
chr1 (19-66)||(49906493-49906540)
chr1 (1-66)||(43196091-43196156)
chr1 (10-66)||(27563488-27563544)
chr1 (10-66)||(47113278-47113334)
chr1 (10-66)||(49621367-49621423)
[»] chr5 (2 HSPs)
chr5 (10-67)||(36786269-36786326)
chr5 (10-66)||(36416073-36416129)
[»] chr3 (1 HSPs)
chr3 (10-66)||(47849676-47849732)


Alignment Details
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 21253909 - 21253840
Alignment:
Q  228 attcaattgctgtatgtaattttgtattctctaatatgcacaacttgtgcttaaaaagaaatatacaatt 297  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21253909 attctattgttgtatgtaattttgtattctctaatatgcacaacttgtgcttaaaaagaaatatacaatt 21253840  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 41890578 - 41890531
Alignment:
Q  19 gagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| ||||||||||||| ||||||||  |||||||||||||||||    
T  41890578 gagaaaattgtcaaaaaattgttgcaaaattgatgtacaaatatcatt 41890531  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42060725 - 42060660
Alignment:
Q  1 catcatattagtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| | |||||| |||||||||| |||| |||||| || |||||||||||||||    
T  42060725 catcatgtgagtatgagagagaaagttgtcaaaaagttatagcaaaatggttgtacaaatatcatt 42060660  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 28081793 - 28081849
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| |||| ||||||||||| ||||| || |||||||||||||||    
T  28081793 agtatgagagagaaagttgtaaaaaaattattacaaaatggttgtacaaatatcatt 28081849  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44170621 - 44170686
Alignment:
Q  1 catcatattagtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||||| |||||||| |||||| |||||||||||||||  ||||| || |||||||||||||||    
T  44170621 catcatataagtatgtgagagaaagttgtcaaaaaattataacaaaatggttgtacaaatatcatt 44170686  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 49768880 - 49768936
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  49768880 agtatgagagagaaagttgtcaaaaaattgttgcaaaatggatgtacaaatatcatt 49768936  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 48722129 - 48722073
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| |||||||||| || |||||||| ||||||||||||||||||    
T  48722129 agtatgagagagaaaattgtcaaaaagttgttgcaaaatggatgtacaaatatcatt 48722073  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 6239431 - 6239388
Alignment:
Q  19 gagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatat 62  Q
    |||||| |||||||||||||||||||||| || |||||||||||    
T  6239431 gagaaagttgtcaaaaaattattgcaaaatggttgtacaaatat 6239388  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40721966 - 40722031
Alignment:
Q  1 catcatattagtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| | |||||| ||||| ||||||||||  |||| ||||||||||||||||||    
T  40721966 catcatgtgagtatgagagagaaagttgtccaaaaattattataaaatggatgtacaaatatcatt 40722031  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 49424831 - 49424887
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| |||||||||| || || |||||||| |||||||||||||||    
T  49424831 agtatgagagagaaagttgtcaaaaagttgttacaaaaaggttgtacaaatatcatt 49424887  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 11114689 - 11114736
Alignment:
Q  19 gagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  11114689 gagaaagttgtcaaaaagttattgcaaaatggatgtacaaatatcatt 11114736  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38504239 - 38504174
Alignment:
Q  1 catcatattagtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||||| |||||  | |||||| ||||||||||||| | |||||| || |||||||||||||||    
T  38504239 catcatatgagtattagagagaaagttgtcaaaaaattgtagcaaaatggttgtacaaatatcatt 38504174  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 10184137 - 10184193
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| || |||||||||||||||||||  ||| |||||||||||||    
T  10184137 agtatgagagagaaaattatcaaaaaattattgcaaaatagatatacaaatatcatt 10184193  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1298263 - 1298198
Alignment:
Q  1 catcatattagtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||||| |||||| | |||||| ||||||||||||||| |||||| || | |||||||||||||    
T  1298263 catcatataagtatgagagagaaaattgtcaaaaaattatagcaaaatggttctacaaatatcatt 1298198  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 43056776 - 43056719
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcattc 67  Q
    |||||| | |||||| ||||| |||||||||||||||| || ||||||||||||||||    
T  43056776 agtatgagagagaaagttgtccaaaaattattgcaaaatggttgtacaaatatcattc 43056719  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 1156530 - 1156487
Alignment:
Q  19 gagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatat 62  Q
    |||||| |||||||||||||||||||||| | ||||||||||||    
T  1156530 gagaaagttgtcaaaaaattattgcaaaatgaatgtacaaatat 1156487  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 32196698 - 32196647
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaata 61  Q
    |||||| | |||||| |||||||||||||||||||||| || ||||||||||    
T  32196698 agtatgagagagaaaattgtcaaaaaattattgcaaaagggttgtacaaata 32196647  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 49906540 - 49906493
Alignment:
Q  19 gagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| ||||||||||||| |||||||| | ||||||||||||||||    
T  49906540 gagaaaattgtcaaaaaattgttgcaaaatgaatgtacaaatatcatt 49906493  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43196091 - 43196156
Alignment:
Q  1 catcatattagtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| | |||||| |||||||||| || | |||||| ||||||||||||||||||    
T  43196091 catcatgtgagtatgagagagaaaattgtcaaaaagttgtagcaaaatggatgtacaaatatcatt 43196156  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 27563544 - 27563488
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| ||||||||||||||| |||||| |  |||||||||||||||    
T  27563544 agtatgagagagaaaattgtcaaaaaattatagcaaaatgattgtacaaatatcatt 27563488  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 47113334 - 47113278
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| ||||| |||||||||||||||| |  |||||||||||||||    
T  47113334 agtatgagagagaaagttgtccaaaaattattgcaaaatgattgtacaaatatcatt 47113278  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 49621423 - 49621367
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||| | |||||| ||||| |||||||||| ||||| || |||||||||||||||    
T  49621423 agtatgagagagaaagttgtctaaaaattattacaaaatggttgtacaaatatcatt 49621367  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 36786269 - 36786326
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcattc 67  Q
    |||||| | |||||| ||||| |||||||||||||||| || || |||||||||||||    
T  36786269 agtatgagagagaaagttgtccaaaaattattgcaaaatggttggacaaatatcattc 36786326  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 36416073 - 36416129
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||||| |||||| ||||||||||||| ||  |||| || |||||||||||||||    
T  36416073 agtatgtgagagaaagttgtcaaaaaattgttagaaaatggttgtacaaatatcatt 36416129  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 47849732 - 47849676
Alignment:
Q  10 agtatgtgtgagaaacttgtcaaaaaattattgcaaaaaggatgtacaaatatcatt 66  Q
    |||||||  |||||| |||||||||||||||  ||||| || |||||||||||||||    
T  47849732 agtatgtaagagaaagttgtcaaaaaattatcacaaaatggttgtacaaatatcatt 47849676  T

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