View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_147 (Length: 284)
Name: NF9005_low_147
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_147 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 43453952 - 43454225
Alignment:
| Q |
1 |
acacttgtacgaatgaaatctttttaatcattagcaggattacacttacagaagcacaatttactttatattatcgaacttgttaagcctctagtcaaaa |
100 |
Q |
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| T |
43453952 |
acacttgtacgaattaaatctttttaatcattagcaggattacacttacagcagcacaatttactttatattatcgaacttgttaagcctctagtcaaaa |
43454051 |
T |
|
| Q |
101 |
ccatatcttttaggatgcaatcaggcagacaaattaggatgaataaggatggattaaagcgagatacannnnnnngaaaaaaggtatagtttaatttctc |
200 |
Q |
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| T |
43454052 |
ccatatcttttaggatgcaatcgggcagacaaattaggatgaataaggatggattaaagcgagatacatttttttgaaaaaaggtatagtttaatttctc |
43454151 |
T |
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| Q |
201 |
tacaatgataaaactaaaaaacagaagttattaaccagcttgtcaaagcctatatgaatctcttaaaacaacac |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454152 |
tacaatgataaaactaaaaaacagaagttattaaccagcttgtcaaagcctatatgaatctcttaaaacaacac |
43454225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 43446235 - 43446274
Alignment:
| Q |
190 |
tttaatttctctacaatgataaaactaaaaaacagaagtt |
229 |
Q |
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| T |
43446235 |
tttaatttctctataatgataaaacaaaaaaacagaagtt |
43446274 |
T |
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