View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9005_low_149 (Length: 283)
Name: NF9005_low_149
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_149 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 36160547 - 36160794
Alignment:
| Q |
1 |
acaaggagtgttacttaggttttaaataaaagggtttagagacaa-gcaaaagctgtcagccagctgaactgaatgagtatgtagagatggaaaaaatct |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36160547 |
acaaggagtgttacttaggttttaaataaaaaggtttagagacaaagcaaaagctgtcagccagctgaactgaatgagta----gagatggaaaaaatct |
36160642 |
T |
|
| Q |
100 |
gtcagttactttggattcagcacaaaagattatgaaatttagcatcgaaatgtgcaaattaacattcacgacatagcaaaagacaaatttcaaggggcag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
36160643 |
gtcagttactttggattcagcacaaaagcttatgaaatttagcattgaaatgcgcaaattaacattcacgccatagcaaaagacaaatttcaagaggcag |
36160742 |
T |
|
| Q |
200 |
tttccttttcttagtctttaggatacgtttgtttcatttatcaagatattct |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36160743 |
tttccttttcttagtctttaggatacgtttgtttcatttatcaagatattct |
36160794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 36154820 - 36155068
Alignment:
| Q |
1 |
acaaggagtgttacttaggttttaaataaaagggtttagagacaagcaaaagctgtcagccagctgaactgaatgagtatgtagagatggaaaaaatctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
36154820 |
acaaggagtgttacttaggttttaaataaaaaggtttagagacaagcaaaagctatcagccaactgaactgaatgagtaa----agatggaaaaaatctg |
36154915 |
T |
|
| Q |
101 |
tcagttactttggattcagcacaaaagattatgaaatttagcatcgaaatgtgcaaattaacattcacgacatagcaaaagacaaatttcaaggggcagt |
200 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
36154916 |
tcagttatcttggattcagcacaaaagcttatgaaatttagcattgaaatgtgcaaattaacattcacgccattgtaaaagacaaatttcaaggggcagt |
36155015 |
T |
|
| Q |
201 |
ttccttttcttagtctttaggatacgtttgtttcat--ttatcaagatattct |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36155016 |
ttccttttcttagtctttaggatacgtttgtttcatgattatcaagatattct |
36155068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University