View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_150 (Length: 280)
Name: NF9005_low_150
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_150 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 49464928 - 49465191
Alignment:
| Q |
1 |
taaaggtaaacatttatctattttttaagataaaagacatttataacccataaataaatgcttagatagtgagaaaaatatgattatgatttggagagtg |
100 |
Q |
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| T |
49464928 |
taaaggtaaacatttatctattttttaagataaaagacatttataacccataaataaatgcttagatagtgagaaaaatatgattatgatttggagagtg |
49465027 |
T |
|
| Q |
101 |
agaatccaaattaatattgagttcattacttgcatattggtggcacttcctctggtttgaatggttgaggagcaacagcaaaaccaaatgtatctctcca |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49465028 |
agaatccaaattaatattgagttcattacctgcatattggtggcacttcctcgggtttgaatggatgaggagcaacagcaaaaccaaatgtatctctcca |
49465127 |
T |
|
| Q |
201 |
attagcagcttgcccactaaacaagtgtacattggaataatacataacttttttctttaaatca |
264 |
Q |
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| T |
49465128 |
attagcagcttgcccactaaacaagtgtacattagaataatacataacttttttctttaaatca |
49465191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 1093503 - 1093255
Alignment:
| Q |
15 |
tatctattttttaagataaaagacatttataacccataaataaatgcttagatagtgagaaaaatatgattatgatttggagagtgagaatccaaattaa |
114 |
Q |
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|||||| |||||||||| | | |||| |||||||||||||||||||| |||||| | | |||| |||||||||||| ||||||||||||||||||||| |
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| T |
1093503 |
tatctactttttaagattagaaacatatataacccataaataaatgcctagatatacaaataaatttgattatgattttgagagtgagaatccaaattaa |
1093404 |
T |
|
| Q |
115 |
tattgagttcattacttgcatattggtggcacttcctctggtttgaatggttgaggagcaacagcaaaaccaaatgtatctctccaattagcagcttgcc |
214 |
Q |
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| T |
1093403 |
tattgagttcattacctgcatattggtggcacttcatctggtttgaatgaatgaggagcaatagcaaaaccaaatgtatctctccaattagcaggttttc |
1093304 |
T |
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| Q |
215 |
cactaaacaagtgtacattggaataatacataacttttttctttaaatc |
263 |
Q |
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||||||||||| ||||||| || ||||||||||||||||| || ||||| |
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| T |
1093303 |
cactaaacaagagtacattagagtaatacataacttttttgttcaaatc |
1093255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 76 - 263
Target Start/End: Complemental strand, 29463178 - 29462991
Alignment:
| Q |
76 |
aaatatgattatgatttggagagtgagaatccaaattaatattgagttcattacttgcatattggtggcacttcctctggtttgaatggttgaggagcaa |
175 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||| |||||||| | |||||||| |
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| T |
29463178 |
aaatctgattatgatttagagagtgagaatccaaattaatattgagtttattacctgcatatttgtggcacttcatctggattgaatggatcaggagcaa |
29463079 |
T |
|
| Q |
176 |
cagcaaaaccaaatgtatctctccaattagcagcttgcccactaaacaagtgtacattggaataatacataacttttttctttaaatc |
263 |
Q |
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||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||| || |||||| |||||||||||||||||| |
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| T |
29463078 |
tagcaaaaccaaatgtatctctccaattagcaccttgtccattaaacaagcgtacattagagtaatacgaaacttttttctttaaatc |
29462991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 153 - 264
Target Start/End: Complemental strand, 19890713 - 19890602
Alignment:
| Q |
153 |
tggtttgaatggttgaggagcaacagcaaaaccaaatgtatctctccaattagcagcttgcccactaaacaagtgtacattggaataatacataactttt |
252 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||| |
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| T |
19890713 |
tggtttgaatggatgaggagcaacagcaaaaccaattgtatctctccaattagcagcttggccactaaacaaggttccattggagaaatacataactttt |
19890614 |
T |
|
| Q |
253 |
ttctttaaatca |
264 |
Q |
| |
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|||||||||||| |
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| T |
19890613 |
ttctttaaatca |
19890602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 19844885 - 19844797
Alignment:
| Q |
124 |
cattacttgcatattggtggcacttcctctggtttgaatggttgaggagcaacagcaaaaccaaatgtatctctccaattagcagcttg |
212 |
Q |
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|||||| ||||||||||||| | ||| |||||||||||||| | |||||||||| | || |||| |||||||||||||| ||||||||| |
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| T |
19844885 |
cattacctgcatattggtggtatttcttctggtttgaatggatcaggagcaacaacgaatccaactgtatctctccaatcagcagcttg |
19844797 |
T |
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