View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_157 (Length: 270)
Name: NF9005_low_157
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_157 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 26 - 258
Target Start/End: Original strand, 51441194 - 51441425
Alignment:
| Q |
26 |
cctcaaacagacctcagattgattatgaagttaatgaggaggtaaatgttttttattgtgtagannnnnnnaatttcttatatagcatggtgcaaagaga |
125 |
Q |
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| T |
51441194 |
cctcaaacagaccccagattgattatgaagttaatggggaggtaaatgttttttattgtgtagatttttt-aatttcttatatggcatgttgcaaagaga |
51441292 |
T |
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| Q |
126 |
acttggtcgttgcaagtcatacgttgtatttgacatggtgctttcagggtttacgagaagcaataaataattgtgacattgctgctgtcaaaaaacttct |
225 |
Q |
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| T |
51441293 |
acttggctgttggaagtcatacgttgtatttgacgtgatgcttttagggtttacgagaagcaataaaaaatggtgacattgctgctgtcaaaaaacttct |
51441392 |
T |
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| Q |
226 |
tagtgaggtctatttctttcaaatgttgcacct |
258 |
Q |
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| T |
51441393 |
taatgaggtctgtttctttcaaacgatgcacct |
51441425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 107 - 260
Target Start/End: Original strand, 11909813 - 11909966
Alignment:
| Q |
107 |
atagcatggtgcaaagagaacttggtcgttgcaagtcatacgttgtatttgacatggtgctttcagggtttacgagaagcaataaataattgtgacattg |
206 |
Q |
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| T |
11909813 |
atagcatggtgcaaagagaacttggttgttacaagtcatacgttgtatttgacatggtgctttcagggtttacgagaagcaataaataatggtgacattg |
11909912 |
T |
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| Q |
207 |
ctgctgtcaaaaaacttcttagtgaggtctatttctttcaaatgttgcacctct |
260 |
Q |
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| T |
11909913 |
ctgctgtcaaaaaacttcttaatgaggtctgtttctttcaaatgatgcacctct |
11909966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 15264 - 15335
Alignment:
| Q |
189 |
taaataattgtgacattgctgctgtcaaaaaacttcttagtgaggtctatttctttcaaatgttgcacctct |
260 |
Q |
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| T |
15264 |
taaataatggtgacattgctgctgtcaaaaaacttcttaatgaggtctgtttctttcaaatgatgcacctct |
15335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 35045242 - 35045313
Alignment:
| Q |
189 |
taaataattgtgacattgctgctgtcaaaaaacttcttagtgaggtctatttctttcaaatgttgcacctct |
260 |
Q |
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| T |
35045242 |
taaataatggtgacattgctgctgtcaaaaaacttcttaatgaggtctgtttctttcaaatgatgcacctct |
35045313 |
T |
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