View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_16 (Length: 681)
Name: NF9005_low_16
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 149 - 661
Target Start/End: Original strand, 3342410 - 3342922
Alignment:
| Q |
149 |
aaattgctatttaggcttttaaaattgctctcaaccactccgaagtaatccattccaaatactctccacggaagttaactgtcgctcggtcttgaacaaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
3342410 |
aaattgctatttaggcttttaaaattgctctcaaccactccgaagtaatccattccaaatactctcgacagaagttaactgtcgctcggtcttgaacaaa |
3342509 |
T |
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| Q |
249 |
agttaactttcgttacaaatgtttattaaatttcccaacggcatcacttaagtgtcgttcattccgttttggttactttctcgtccaatattggatcgtg |
348 |
Q |
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| T |
3342510 |
agttaacttccgttacaaatgtttattaaatttcccaacggcatcacttaagtgtcgttcattccgttttggttactttctcgtccaatattggatcgtg |
3342609 |
T |
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| Q |
349 |
tttgtgcatggagagttggggaattcttcataacataaaattagcaaatgtggactccgactcaactgtggcaatcaagttattgcagcattgaacacca |
448 |
Q |
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| T |
3342610 |
tttgtgcatggagagttggggaattcttcataacataaaattagcaaatgtagactccgactcaactgtggcaatcaagttattgcagcattgaacacca |
3342709 |
T |
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| Q |
449 |
tgcttctcaactagttaaaacaatccattgtctagtttaaagggtactgtgatttggtggcaacgcattctatgggaggctcaatataatttatcagtta |
548 |
Q |
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| T |
3342710 |
tgcttctcaactagttaaaacaatccattgtctagtttaaagggtacggtgatttggtggcaacgcattctatgggaggctcaatataatttatcagtta |
3342809 |
T |
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| Q |
549 |
ttgataatctcaaagtttttgaatcagttccaaatttgagcataaaaagggtatttaaacttttcatcaaacatcttttggaaaatagaaatgcacaatt |
648 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
3342810 |
ttgataatctcaaagttttttaatcagttccaaatttgagcataaaaagggtatttaaacttttcatcaaacaacatttggaaaatagaaatgcacaatt |
3342909 |
T |
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| Q |
649 |
gtttcataaaaaa |
661 |
Q |
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||||||||||||| |
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| T |
3342910 |
gtttcataaaaaa |
3342922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 3341446 - 3341573
Alignment:
| Q |
14 |
cagagaggggggcagagaagtgaagtgaggtgaggaaaagttgaaaataaattagaatatttggatatatgggctggcttctaaaagttgtttgtcatac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3341446 |
cagagaggggggcagagaagtgaagtgaggtgaggaaaagttgaaaataaattagaatatttggatatatgggctggcttctaaaagttgtttgtcatac |
3341545 |
T |
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| Q |
114 |
gggctagattaacggtccgtttatcttc |
141 |
Q |
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| T |
3341546 |
gggctagattaacggtccgtttatcttc |
3341573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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