View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_161 (Length: 266)
Name: NF9005_low_161
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_161 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 4051330 - 4051494
Alignment:
| Q |
1 |
cattctcatttcttctgtaatagggaatgatggagaggtatcaatatcaatgtctacgtctacctgttaaaattttaacaaattagactaatgcaaatca |
100 |
Q |
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| T |
4051330 |
cattctcatttcttctgtaatagggaatgatggagaggtatcaatatcaatgtctacatctacctgttaaaattttaacaaattagactaatgcaaatca |
4051429 |
T |
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| Q |
101 |
aagttttgaattaaagtgattgtttttgttttgcaattacttaaagagatctatatgcatctttt |
165 |
Q |
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| T |
4051430 |
aagttttggattaaagtgattgtttttgttttgcaattacttaaagagatctatatgcatctttt |
4051494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 4051544 - 4051585
Alignment:
| Q |
215 |
tgagggtgtgaaagtaccaatggaatctcatcaatatctgtg |
256 |
Q |
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| T |
4051544 |
tgagggtgtgaaagtaccaatggaatctcatcaatatctgtg |
4051585 |
T |
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