View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_162 (Length: 266)
Name: NF9005_low_162
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_162 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5832827 - 5832578
Alignment:
| Q |
1 |
tccttctatcaaacagtgcatgtcgaaaatacttaaaccgaatcctgaactcgcgaaattcgttacaaaagaatgttcaggagacaattgggaacgtata |
100 |
Q |
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| T |
5832827 |
tccttctatcaaacagtgcatgtcgaaaatacttaaaccgaatcctgaactcgcgaaattcgttacaaaagaatgttcaggagacaattgggaacgtata |
5832728 |
T |
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| Q |
101 |
atcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagtacattcctacccttgattattacagtggtaaccttc |
200 |
Q |
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| T |
5832727 |
atcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagtacattcctacccttgattattacagtggtaaccttc |
5832628 |
T |
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| Q |
201 |
caaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaac |
250 |
Q |
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| T |
5832627 |
caaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaac |
5832578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 5823240 - 5823488
Alignment:
| Q |
2 |
ccttctatcaaacagtgcatgtcgaaaatacttaaaccgaatcctgaactcgcgaaattcgttacaaaagaatgttcaggagacaattgggaacgtataa |
101 |
Q |
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| T |
5823240 |
ccttcaatcaaagaatgcatgtccaaaatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataa |
5823339 |
T |
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| Q |
102 |
tcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagtacattcctacccttgattattacagtggtaaccttcc |
201 |
Q |
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| T |
5823340 |
tcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctacc |
5823439 |
T |
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| Q |
202 |
aaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaac |
250 |
Q |
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| T |
5823440 |
aaaaccatgtacaatatatgcttcatctgaatgctattttggacttaac |
5823488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 78118 - 78198
Alignment:
| Q |
113 |
tggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagtacattcctacccttgattattacagtggt |
193 |
Q |
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| T |
78118 |
tggcctaacaccaaatatttagatgtcattgtaactggtgctatggctcaatacattccaacacttaattactacagtggt |
78198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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