View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_169 (Length: 258)
Name: NF9005_low_169
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_169 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 46871687 - 46871434
Alignment:
| Q |
5 |
tggagaagcagagaaatgatttatttgatcaacaagaatttgaatcccaccaattcacaactttacttgaatattttatatttaaatagcgaattaaata |
104 |
Q |
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| T |
46871687 |
tggagaagaagagaaatgatttatttgatcaacaagaatttgaatcccaccaattcacaactttacttgactattttatatttaaatagcgaattaaata |
46871588 |
T |
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| Q |
105 |
ttttatattgaatctagaggaaacaattttagaatctcacaatgtagcgaattaaaatttgaaaacaaaaatgttttttcattagtttttataatcaaga |
204 |
Q |
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| T |
46871587 |
ttttatattgaatctagaggaaacaattttagaatctcacaatgtagcgaattaaaatttgaaaacaaaaatgttttttcattagtttttataatcaaga |
46871488 |
T |
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| Q |
205 |
aggtttaacatttagacaaaagtgtcatattttaaaatggaattttggaaatcg |
258 |
Q |
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| T |
46871487 |
aggtttaacatttagacaaaagtgtcatattttaaaatggaattttggaaatcg |
46871434 |
T |
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