View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_17 (Length: 671)
Name: NF9005_low_17
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 33943420 - 33943088
Alignment:
| Q |
18 |
ataatttaggggaataacaatgttattggtgtttagatgtaagctattccacatgatattaagttggttcgtacatagcatgaatttgtcctatgttata |
117 |
Q |
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| T |
33943420 |
ataatttaggggaataacaatgttattggtgtttagatgtaagctattccacatgatattaagttggctcgtacatagcatgaatttgtcctatgttat- |
33943322 |
T |
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| Q |
118 |
tgagtttattactctttgatggaannnnnnnncttccatcaaatagtaagtttttccatgtgaatcaacgtcaatctctcaatctcttgccttaaacctt |
217 |
Q |
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| T |
33943321 |
-gagtttattactctttgatggaattttttttcttccatcaaatagtaagtttttccatgtgaatcaacgtcaatccctcaatct-------taaacctt |
33943230 |
T |
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| Q |
218 |
tctttgaaaaggttttaaatctcctctatcgactgatttggagtttctcattttctcattgtttcctcaaatctaattgttgtgtggatttcttgactca |
317 |
Q |
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| T |
33943229 |
tctttgaaaaggttttaaatctcctctatcgactgatttggagtttctcattttctcattgtttcctcaaatctaattgttgtgtggatttcttgactca |
33943130 |
T |
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| Q |
318 |
tcaacggaaccatgcaccattgttatattatatagatccatt |
359 |
Q |
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| T |
33943129 |
tcaacggaaccatgcaccattgttatattatatagatccatt |
33943088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 420 - 660
Target Start/End: Complemental strand, 33943030 - 33942790
Alignment:
| Q |
420 |
cctctattctgaaaatgatttcttgtcttaaatgtatgtattgtttggtgaatttaacgttgaacttggtgtggaaaaagacaataggataatttgttga |
519 |
Q |
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| T |
33943030 |
cctctattctgaaaatgatttcttgtcttaaatgtatgtattgtttggtgaatttaacgttgaacttggtgtggaaaaagacaataggatactttgttga |
33942931 |
T |
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| Q |
520 |
attcacccaaaatgtcatctctccctgaagaactatggagcagaattctggaaatcggaattgaaaaaagcagcttgagctacaaggatctctgttgcat |
619 |
Q |
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| T |
33942930 |
attcacccaaaatgtcatctctccctgaagaactatggagcagaattctggaaatcggaattgaaaaaagcagcttgagctacaaggatctctgttgcat |
33942831 |
T |
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| Q |
620 |
ctcaatctcttgccacctccttcaccgcctttcctctgatg |
660 |
Q |
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| T |
33942830 |
ctcaatctcttgccacctccttcaccgcctttcctctgatg |
33942790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 649
Target Start/End: Complemental strand, 33934741 - 33934620
Alignment:
| Q |
528 |
aaaatgtcatctctccctgaagaactatggagcagaattctggaaatcggaattgaaaaaagcagcttgagctacaaggatctctgttgcatctcaatct |
627 |
Q |
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| T |
33934741 |
aaaatgtcgtctctcccaatcgaactatggaccaaaattctcgaaatcggaatccaagattgcggtttgagctacaaagacctctgctgcatctcaatct |
33934642 |
T |
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| Q |
628 |
cttgccacctccttcaccgcct |
649 |
Q |
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| |||| ||||||||||||||| |
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| T |
33934641 |
cctgccgcctccttcaccgcct |
33934620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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