View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_180 (Length: 247)
Name: NF9005_low_180
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_180 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 41939197 - 41938969
Alignment:
| Q |
1 |
aggtgggggtgcaaccacttccttccacaaacaagttttccactttattgtcatgtagtataaattttaatggaagctccctcaaatagaaataagatct |
100 |
Q |
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| T |
41939197 |
aggtgggggtgaaaccacttccttccacaaacaagttttccactttattgtcatgtagtataaattttaatggaagctccctcaaatagaaataagatat |
41939098 |
T |
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| Q |
101 |
ggctaacctagtttcagtttcgatgattgattgtgtacttaagaagttcaactactttcatggtttcagaaaagcaattaacaagggaattggggtcgac |
200 |
Q |
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| T |
41939097 |
ggctaacctagtttcagtttcgatgattgattgtgtacttaagaagttcaactactttcatggtttcagaaaagcaattaacaagggaattggggtcgac |
41938998 |
T |
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| Q |
201 |
aacttgcattatctcaatgatggtctttg |
229 |
Q |
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| T |
41938997 |
aacttgcattatctcaatgatggtctttg |
41938969 |
T |
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