View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_182 (Length: 246)
Name: NF9005_low_182
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_182 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 40225046 - 40225259
Alignment:
| Q |
1 |
ggagaggtgagatagatgagaacagagagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtctttggcgtaggag |
100 |
Q |
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| T |
40225046 |
ggagaggtgagagagatgagaacagagagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtctttggcgtaggag |
40225145 |
T |
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| Q |
101 |
tcagagacgagcattggtggtggtggttgaagaggagtggttgtgggacctacaacggtaggtcgatcggtggtggtggttgttgttggaccagccgcca |
200 |
Q |
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| T |
40225146 |
tcagagacgagcattggtggtggtggttgaagaggagtggttgtgggacctacaacggtaggtcgatcggtggtggtggttgttgttggaccagccgcca |
40225245 |
T |
|
| Q |
201 |
tggatggaaggaag |
214 |
Q |
| |
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|||||||||||||| |
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| T |
40225246 |
tggatggaaggaag |
40225259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 40225259 - 40225287
Alignment:
| Q |
206 |
ggaaggaagatgacaattgttgtttgttt |
234 |
Q |
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| T |
40225259 |
ggaaggaagatgacaattgttgtttgttt |
40225287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 18106802 - 18106911
Alignment:
| Q |
129 |
gaagaggagtggttgtgggacctacaacggtaggtcgatcggtggtggtggttgttgttggaccagccgccat----ggatggaaggaagatgacaattg |
224 |
Q |
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| T |
18106802 |
gaagaggagcggttgtgggacccacaatggtaggtcgatcggaggtggtggttgttgttggaccagccgccatgaaaggaaggaaggaagatgacaattg |
18106901 |
T |
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| Q |
225 |
ttgtttgttt |
234 |
Q |
| |
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|||||||||| |
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| T |
18106902 |
ttgtttgttt |
18106911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 51588139 - 51588077
Alignment:
| Q |
26 |
agagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtct |
88 |
Q |
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| T |
51588139 |
agagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtct |
51588077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 51588073 - 51588012
Alignment:
| Q |
128 |
tgaagaggagtggttgtgggacctacaacggtaggtcgatcggtggtggtggttgttgttgg |
189 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
51588073 |
tgaagaggtgaggttgtgggacctacaacggtaggtcgatcggtggtggtgtttgatgttgg |
51588012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 35301477 - 35301432
Alignment:
| Q |
168 |
cggtggtggtggttgttgttggaccagccgccatggatggaaggaag |
214 |
Q |
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| T |
35301477 |
cggtggtggtggttgttgttgga-cagccgctatggaaggaaggaag |
35301432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 37511733 - 37511810
Alignment:
| Q |
22 |
acagagagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtctttggcgtagga |
99 |
Q |
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||||||||| || ||||| |||||||| |||||||||||||||||||||||||| || || || |||||||||||||| |
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| T |
37511733 |
acagagagcatcaatgatcgcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgcatctttggcgtagga |
37511810 |
T |
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