View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_185 (Length: 242)
Name: NF9005_low_185
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_185 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 50242920 - 50242696
Alignment:
| Q |
18 |
catcagggtatccttttttagcaaggagtctctctctgctcttttctaagatactgtgtctgaatgaaccgattcttgtagctgacgttccatgtgattg |
117 |
Q |
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| T |
50242920 |
catcagggtatccttttttagcaaggagtctctctctgctcttttctaagatactgtgtctgaatgaaccgattcttgtagctgacgttccatgtgattg |
50242821 |
T |
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| Q |
118 |
cattttgggatcaaaagaacagagacacagacacagacacagttgttgttgaatgaaggaatgagaaaatgaaggtaatgttctgtttgtttggggagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50242820 |
cattttgggatcaaaagaacagagacacagacacagacacagttgttgttgaattaaggaatgagaaaatgaaggtaatgttctgtttgtttggggagtg |
50242721 |
T |
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| Q |
218 |
cccaagagtaggaagaccataagac |
242 |
Q |
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| T |
50242720 |
cccaagagtaggaagaccataagac |
50242696 |
T |
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