View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_187 (Length: 241)

Name: NF9005_low_187
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_187
NF9005_low_187
[»] chr1 (6 HSPs)
chr1 (14-219)||(34910479-34910684)
chr1 (14-165)||(28542936-28543086)
chr1 (34-100)||(34905307-34905373)
chr1 (32-100)||(34896753-34896821)
chr1 (144-219)||(34905400-34905478)
chr1 (144-219)||(34896848-34896924)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 34910479 - 34910684
Alignment:
Q  14 cacagacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtt 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34910479 cacacacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtacattcagagtaagcaaagctagaccagttggtt 34910578  T
Q  114 tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactttaaaatattgt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34910579 tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcactacaaataatctatgtgtatgaaaactcgtatttcactttaaaatattgt 34910678  T
Q  214 gcttct 219  Q
    ||||||    
T  34910679 gcttct 34910684  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 28543086 - 28542936
Alignment:
Q  14 cacagacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtt 113  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || || |||    
T  28543086 cacatacacacacccattaattcacatgaaaacttcattaaagaagaaataaaatacaataatagtaaattcaaagtaaccaaagctaga-caatttgtt 28542988  T
Q  114 tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcacta 165  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  28542987 tgcaaatccttcataaaaacaaaatcttcctaaaagcattagctaagtacta 28542936  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 34905307 - 34905373
Alignment:
Q  34 ttcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||    
T  34905307 ttcacatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagct 34905373  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 34896753 - 34896821
Alignment:
Q  32 aattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct 100  Q
    |||||||||||||||||||||| | |||||||||||||  |||||| |||||||||| | |||||||||    
T  34896753 aattcacatgaaatcttcattagaaaagaaagaaaatatgataataataaattcagatttagcaaagct 34896821  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 34905400 - 34905478
Alignment:
Q  144 taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttca---ctttaaaatattgtgcttct 219  Q
    |||||| ||| |||||||||||||||  ||| |||||||||||||||  |||||||   ||||||||||||||||||||    
T  34905400 taaaagaattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttct 34905478  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 34896848 - 34896924
Alignment:
Q  144 taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt-taaaatattgtgcttct 219  Q
    |||||||||| |||||||||||||||  ||| |||||||||||||||  |||||| ||| |  ||||||||||||||    
T  34896848 taaaagcattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcgcttctttaatattgtgcttct 34896924  T

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