View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_193 (Length: 237)
Name: NF9005_low_193
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_193 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 2482350 - 2482574
Alignment:
| Q |
2 |
gtcttgtcgaatttcgaagctgtaaaactcttccaaacaataaatacagatcatgtcgaaatcctcatcccaaagaaaaagattttgttttctgaaaaga |
101 |
Q |
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| T |
2482350 |
gtcttgtcgaatttcgaagctgtaaaactcttccaaacaataaatacagatcatgtcaaaatcctcattccaatgaaaaagattttgttttctgaaaaga |
2482449 |
T |
|
| Q |
102 |
caaaagtcaacatactttgactacattaattgagcgtgatacaagctaacaatgttaccaaggcaatagcacacataatccacattccataattattggt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2482450 |
caaaagtcaacatactttgactacattaattgagcgtgatacaagctaacaatgttaccaaggcaatagcacacataatccaccttccataattattggt |
2482549 |
T |
|
| Q |
202 |
gaggtaagacacatacaaaagttga |
226 |
Q |
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||||||||||| ||||||||||||| |
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| T |
2482550 |
gaggtaagacaaatacaaaagttga |
2482574 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 7524440 - 7524381
Alignment:
| Q |
77 |
aaaaagattttgttttctgaaaagacaaaagtcaacatactttgactacattaattgagc |
136 |
Q |
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||||||| |||| ||| |||||||||||||||||||| || |||| |||||||||||||| |
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| T |
7524440 |
aaaaagactttgatttttgaaaagacaaaagtcaacacacattgattacattaattgagc |
7524381 |
T |
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