View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_2 (Length: 993)

Name: NF9005_low_2
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_2
NF9005_low_2
[»] chr6 (1 HSPs)
chr6 (15-978)||(169462-170425)


Alignment Details
Target: chr6 (Bit Score: 948; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 948; E-Value: 0
Query Start/End: Original strand, 15 - 978
Target Start/End: Complemental strand, 170425 - 169462
Alignment:
Q  15 cacagatcgaccaacatccatagtattagcaccttcagaaaccaccacaggagccggacttcctccaaattccgaaatagcatctctgataatcctcatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  170425 cacagatcgaccaacatccatagtattagcaccttcagaaaccaccacaggagccggacttcctccaaattccgaaatagcatctctgataatcctcatc 170326  T
Q  115 ggcgtcaaaaaattaaacggcacaacatccttcgccaattgagcctccatcttcacaccattgtccttcactttgctcgaaatagcttccacccatggat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  170325 ggcgtcaaaaaattaaacggcacaacatccttcgccaattgagcctccatcttcacaccattgtccttcactttgctcgaaatagcttccacccatggat 170226  T
Q  215 gagtgctccccaagcaaaacggatcatctttaatctccttattcaaaacctccaaaacttctttaccatcaccaactaaacctaaaaacggttttctaag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  170225 gagtgctccccaagcaaaacggatcatctttaatctccttattcaaaacctccaaaacttctttaccatcaccaactaaccctaaaaacggttttctaag 170126  T
Q  315 ctcaatttcttccttgctcacatccaccaacacaaactttacatctttagaccatttcggctcttccccaaaatgaagcagccaattcaacctcgcacca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  170125 ctcaatttcttccttgctcacatccaccaacacaaactttacatctttagaccatttcggctcttccccaaaatgaagcagccaattcaacctcgcacca 170026  T
Q  415 atcacaatcgccacatcacattttccaatagcaagtgacctagccgcggaggcagccaacggatgatcatccggcaacaatcccttccccattggagtag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  170025 atcacaatcgccacatcacattttccaatagcaagtgacctagccgcggaggcagccaacggatgatcatccggcaacaatcccttccccattggagtag 169926  T
Q  515 gaagaaacggaatccctgtcttttccaccaatttcttcaattcatcttcagctttagcataagctgctcctttcccaaacacaatcaacggcctctcggc 614  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  169925 gaagaaacggaatccccgtcttttccaccaatttcttcaattcatcttcagctttagcataagctgctcctttcccaaacacaatcaacggcctctcggc 169826  T
Q  615 ctttctgagaagcgaaacagcttcttgaatcttcgaagattcaacacttataacgtgatttttcttaattttctctgctagattttttgcttcggtcaaa 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  169825 ctttctgagaagcgaaacagcttcttgaatcttcgaagattcaacacttataacgtgacttttcttaattttctctgctagatattttgcttcggtcaaa 169726  T
Q  715 agcgattcagcttcggattctgaaactttttgatgcaatacatcagtaggaagatccaaataaacaccaccaggtcgattcacaacggaattagcgagga 814  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  169725 agcgattcagcttcggattctgaaactttttgatgcaatacatcagtaggaagatccaaataaacaccaccaggtcgattcacaacggaattagcgagga 169626  T
Q  815 cctgtgcgacacaattaggaatttcggagatatgtttagctttgatagcgaattttgtgaaaggcttaacagcttggatctgatcgagttcttgaaaatc 914  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  169625 cctgtgcgacacaattaggaatttcggagatatgtttagctttgatagcgaattttgtgaaaggcttaacagcttggatctgatcgagttcttgaaaatc 169526  T
Q  915 accacggccgacgtcgttttggttacaagaaccggagatcatgacagtaggccatgtgttagtg 978  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  169525 accacggccgacgtcgttttggttacaagaaccggagatcatgacagtaggccatgtgttagtg 169462  T

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