View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_20 (Length: 623)
Name: NF9005_low_20
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_20 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0082 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 14 - 623
Target Start/End: Complemental strand, 38190618 - 38190008
Alignment:
| Q |
14 |
cacagacaaccattgaccaaccaaccttttatatcatcaattttttgtcatagataccactagattttttgtccaaagaaattgtataaaaaacaagcta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38190618 |
cacagacaaccattgaccaaccaaccttttatatcatcaattttttgttatagataccactagattttttgtccaaagaaattgtataaaaaacaagcta |
38190519 |
T |
|
| Q |
114 |
tttaagtatatctacagatactatgatataggaaaggttggtcaacaatttggagagtttgcttttctttcatctttctaagagcagtctgtttgatcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38190518 |
tttaagtatatctacagatactatgatataggaaaggttggtcaacaatttggagagtttgcttttctttcatctttctaagagcagtctgtttgatcaa |
38190419 |
T |
|
| Q |
214 |
atcagg-atcagaccgctcctggtgttcgaactagtcattaatggtcggcttcattggtatcctttcggtatgcgttgcgaacactttcatttttagcgt |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38190418 |
atcagggatcagaccgctcctggtgttcgaactagtcattaatggtcggcttcattggtatcctttcggtatgcgttgtgaacactttcatttttagcgt |
38190319 |
T |
|
| Q |
313 |
ctcatcttatctagagaagcaaaactcgaacggatagagcagatggtccaactacataactttttctttttcattacttctatggtcgtgcctcgtggca |
412 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38190318 |
ctcatcttatctagagaagcgaaactcaaacggatagagcaaatggtccaactacataactttttctttttcattacttctatggtcgtgcctcttggca |
38190219 |
T |
|
| Q |
413 |
cggcagcacccttactattgaaatggttcgtcagtagagatgttcccacaggtgcccctttttccaatgggactataattcctattcttatcccttcatt |
512 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38190218 |
cagcagcacccttactattgaaatggttcgtcagtagagatgttcccacaggtgcccctttttccaatgggactataattcctattcttatccctttatt |
38190119 |
T |
|
| Q |
513 |
ccctcttttggtctatctacattccaggaaattcatactatggaccagtattaccacagattaaagtaattgtgggcctgtgtccttacaaaaactctac |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
38190118 |
ccctcttttggtctatctacattccaggaaattcatactatggaccagtattaccacagattaaagtaattgtgggcctgtggcattacaaaaactctac |
38190019 |
T |
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| Q |
613 |
agacctaccat |
623 |
Q |
| |
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| ||||||||| |
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| T |
38190018 |
aaacctaccat |
38190008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 143 - 550
Target Start/End: Complemental strand, 55728 - 55320
Alignment:
| Q |
143 |
aggaaaggttggtcaacaatttggagagtttgcttttctttcatctttctaagagcagtctgtttgatcaaatcagg-atcagaccgctcctggtgttcg |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55728 |
aggaaaggttggtcaacaatttggagagtttgcttttctttcatctttctaagagcagtctgtttgatcaaatcagggatcagaccgctcctggtgttcg |
55629 |
T |
|
| Q |
242 |
aactagtcattaatggtcggcttcattggtatcctttcggtatgcgttgcgaacactttcatttttagcgtctcatcttatctagagaagcaaaactcga |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55628 |
aactagtcattaatggtcggcttcattggtatcctttcggtatgcgttgcgaacactttcatttttagcgtctcatcttatctagagaagcgaaactcga |
55529 |
T |
|
| Q |
342 |
acggatagagcagatggtccaactacataactttttctttttcattacttctatggtcgtgcctcgtggcacggcagcacccttactattgaaatggttc |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55528 |
acggatagagcagatggtccaactacataactttttctttttcattacttctatggtcgtgcctcgtggcacggcagcacccttactattgaaatggttc |
55429 |
T |
|
| Q |
442 |
gtcagtagagatgttcccacaggtgcccctttttccaatgggactataattcctattcttatcccttcattccctcttttggtctatctacattccagga |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55428 |
gtcagtagagatgttcccacaggtgcccctttttccaatgggactataattcctattcttatcccttcattccctcttttggtctatctacattccagga |
55329 |
T |
|
| Q |
542 |
aattcatac |
550 |
Q |
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||||||||| |
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| T |
55328 |
aattcatac |
55320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 143 - 550
Target Start/End: Original strand, 55383 - 55790
Alignment:
| Q |
143 |
aggaaaggttggtcaacaatttggagagtttgcttttctttcatctttctaagagcagtctgtttgatcaaatcaggatcagaccgctcctggtgttcga |
242 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |
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| T |
55383 |
aggaaaggttggtcaataatttggagagtttgcttttctttcatctttctaagagcagtttgtttgatcaaacagggatcaaaccgctcctggtgttcga |
55482 |
T |
|
| Q |
243 |
actagtcattaatggtcggcttcattggtatcctttcggtatgcgttgcgaacactttcatttttagcgtctcatcttatctagagaagcaaaactcgaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55483 |
actagtcattaatggtcggcttcattggtatcctttcggtatgcgttgcgaacactttcatttttagcgtctcatcttatctagagaagcgaaactcgaa |
55582 |
T |
|
| Q |
343 |
cggatagagcagatggtccaactacataactttttctttttcattacttctatggtcgtgcctcgtggcacggcagcacccttactattgaaatggttcg |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
55583 |
cggatagagcagatggtccaactacataactttttctttttcattacttctaaggtcgtgcctcgtggcacggcaacacccttattattgaaatggttcg |
55682 |
T |
|
| Q |
443 |
tcagtagagatgttcccacaggtgcccctttttccaatgggactataattcctattcttatcccttcattccctcttttggtctatctacattccaggaa |
542 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55683 |
ttagtagagatgttcccacaggtgcccctttttccaatgggactataattcctattcttatcccttaattccctcttttggtctatctacattccaggaa |
55782 |
T |
|
| Q |
543 |
attcatac |
550 |
Q |
| |
|
|||||||| |
|
|
| T |
55783 |
attcatac |
55790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 335 - 521
Target Start/End: Complemental strand, 29161052 - 29160872
Alignment:
| Q |
335 |
aactcgaacggatagagcagatggtccaactacataactttttctttttcattacttctatggtcgtgcctcgtggcacggcagcacccttactattgaa |
434 |
Q |
| |
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||||||||||||||||||||||||| | ||||| |||||||||| |||| ||| ||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
29161052 |
aactcgaacggatagagcagatggttcgactacctaactttttc------attatttccatgatcgtgccttgtggcatggcagcacccttactattgaa |
29160959 |
T |
|
| Q |
435 |
atggttcgtcagtagagatgttcccacaggtgcccctttttccaatgggactataattcctattcttatcccttcattccctctttt |
521 |
Q |
| |
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|||||| ||||||| |||||| ||| |||||||||||||| ||| ||||||||| |||||||||||| || || ||||||||||| |
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| T |
29160958 |
atggtttgtcagtatagatgtctacaccggtgcccctttttcgaattggactataactcctattcttattccgtctttccctctttt |
29160872 |
T |
|
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