View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_200 (Length: 232)
Name: NF9005_low_200
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_200 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 3013982 - 3013781
Alignment:
| Q |
18 |
caagaaacaggtttccgattactcggtggcttaacagtatcacctggaaaatcaaagcaaaacaaaaacctcgaagtttattattgatattaaagcagca |
117 |
Q |
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| T |
3013982 |
caagaaacaggtttccgattactcggtggcttaacagtatcacctggaaaatcaaagcaaaacaaaaacctcgaagtttattattgatattaaagcagca |
3013883 |
T |
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| Q |
118 |
tcaagcaaaattcaaacatgttgtcttgaataattacacaaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatctt |
217 |
Q |
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| T |
3013882 |
tcaagcaaaattcgaacatgttgtcttgaataattacacaaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatctt |
3013783 |
T |
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| Q |
218 |
ct |
219 |
Q |
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|| |
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| T |
3013782 |
ct |
3013781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 40672796 - 40672856
Alignment:
| Q |
156 |
caaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttct |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40672796 |
caaaattcaagcataa---taataatcaatcgattttagttatcattaccttcattcatcttct |
40672856 |
T |
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