View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_208 (Length: 227)
Name: NF9005_low_208
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_208 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 9894963 - 9895161
Alignment:
| Q |
13 |
attattctgcactaatttgccttcacaaagacattgaaacattagcataaccatctctttctcatagttttcatgcctttgtgtcttcagtttctctttg |
112 |
Q |
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| T |
9894963 |
attattctgcattaatttgccttcacaaagacattgaaacatgagcataaccatctctttctcatagttttcatgcctttgtgtcttcagtttctctttg |
9895062 |
T |
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| Q |
113 |
gccttcagaaccctttgtatcatataagtctcttggttcatcattttctgactcttctcccactcagacattgctctgaa-ttttgagagcactgtttg |
210 |
Q |
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| T |
9895063 |
gccttcagaaccctttgtatcatataagtctcttggttcatcattttctggctcttctcccactcagacattgttctgaatttttgagagcactgtttg |
9895161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 11248044 - 11248222
Alignment:
| Q |
32 |
ccttcacaaagacattgaaacattagcataaccatctctttctcatagttttcatgcctttgtgtcttcagtttctctttggccttcagaaccctttgta |
131 |
Q |
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| T |
11248044 |
ccttcataaagatattgaaacatcagcattgccatctctttctctttgttgtcatgcctttgcatcttcagtttctctttggcctttagaaccctttctt |
11248143 |
T |
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| Q |
132 |
tcatataagtctcttggttcatcattttctgactcttctcccactcagacattgctctgaattttgagagcactgtttg |
210 |
Q |
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| T |
11248144 |
tcatatatgtttcttgattcaccattttcttgctcttatccctttcagtcattgttctgaattttgagagcactgtttg |
11248222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 11106780 - 11106708
Alignment:
| Q |
89 |
ctttgtgtcttcagtttctctttggccttcagaaccctttgtatcatataagtctcttggttcatcattttct |
161 |
Q |
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| T |
11106780 |
ctttgtttcatcaatttctcttcagccttcagaaccctttgtgccaagaaagtctcttggttcatcattttct |
11106708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 10987070 - 10986998
Alignment:
| Q |
89 |
ctttgtgtcttcagtttctctttggccttcagaaccctttgtatcatataagtctcttggttcatcattttct |
161 |
Q |
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|||||| |||| |||||||||| ||||||| ||| |||||| ||| |||| ||||||||||||||||||| |
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| T |
10987070 |
ctttgtttctttagtttctcttcagccttcaaaacactttgtgtcaagaaagtttcttggttcatcattttct |
10986998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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