View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_215 (Length: 225)
Name: NF9005_low_215
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_215 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 2508455 - 2508263
Alignment:
| Q |
18 |
agaggaaaacaagtccaaggtagtggtgattgattctttgcaatcgtgggagtttcatgtcaaccaagcttctaatcagaattctcctgtaagtcaaagt |
117 |
Q |
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| T |
2508455 |
agaggaaaacaagtccaaggtagtggtgattgattctttgcaatcatgggagtttcatgtcaaccaagcttctaatcagaattctcctgtaagtcaaagt |
2508356 |
T |
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| Q |
118 |
ttgaatgtttttgaagcttcaaacgagtatttgatttgtgaattttctagttttgattcaaattgatttgctggttcaggttgtgttgttctt |
210 |
Q |
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| T |
2508355 |
ttgaatgtttttgaagcttcaaacgagtatttgatttgtgaattttctagttttgattcaaattgatttgctggttcaggttgtgttgttctt |
2508263 |
T |
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