View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_216 (Length: 225)
Name: NF9005_low_216
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_216 |
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| [»] chr6 (9 HSPs) |
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| [»] scaffold1207 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 11170342 - 11170547
Alignment:
| Q |
20 |
ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgc |
119 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
11170342 |
ccgccaacaagcacaacatcatgaattttactcttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagactcttac |
11170441 |
T |
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| Q |
120 |
tgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgt |
219 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
11170442 |
tgagattgtcgaaaattccacgactaatcactgaggagaaatcttcacctttatataaacaatctatctcgatgtcagtcttattattggatgaaagtgt |
11170541 |
T |
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| Q |
220 |
acattt |
225 |
Q |
| |
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|||||| |
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| T |
11170542 |
acattt |
11170547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 11209164 - 11209333
Alignment:
| Q |
20 |
ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgc |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
11209164 |
ccgccaacaagcacaacatcatgaatgttactcttcactatcccactatcttctatacacttttctacaatctccatgcactggtcaaaaagactcttgt |
11209263 |
T |
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| Q |
120 |
tgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctc |
189 |
Q |
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| T |
11209264 |
tgagatcgtcgaactttgcacgactaatcgttgacaaaaaatctttaccttcatttaaacaatctatctc |
11209333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 11275726 - 11275895
Alignment:
| Q |
20 |
ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgc |
119 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| | ||||||||| ||| ||||||| ||||| |
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| T |
11275726 |
ccgccaacaagcacaacatcatgaatgttactcttgtttatcccactatctgctatacacttttctacaatttccatgcactggtaaaaaagactcttgt |
11275825 |
T |
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| Q |
120 |
tgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctc |
189 |
Q |
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|||||| ||||| | ||||||||||| |||||||||||| ||||| | |||||| |||||||| |
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| T |
11275826 |
tgagatcatcgaactttgcacgactaatcaacgaggagaaatctgtaccttggtttaaacattctatctc |
11275895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 11315129 - 11315049
Alignment:
| Q |
20 |
ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac |
100 |
Q |
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| T |
11315129 |
ccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcac |
11315049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 11160912 - 11160989
Alignment:
| Q |
23 |
ccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac |
100 |
Q |
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|||||||| ||||||||||||||| |||| || | ||||||||||| |||||||||||||||| ||||||||||| |
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| T |
11160912 |
ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatctccatgcac |
11160989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 11199488 - 11199565
Alignment:
| Q |
23 |
ccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac |
100 |
Q |
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| T |
11199488 |
ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatctccatgcac |
11199565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 11196495 - 11196575
Alignment:
| Q |
20 |
ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac |
100 |
Q |
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||||||||||| ||||||||||||||| |||| || | ||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
11196495 |
ccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac |
11196575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 11156045 - 11156122
Alignment:
| Q |
23 |
ccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac |
100 |
Q |
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| T |
11156045 |
ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac |
11156122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 11241816 - 11241739
Alignment:
| Q |
23 |
ccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac |
100 |
Q |
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|||||||| ||||||||||||||| |||| || | ||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
11241816 |
ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac |
11241739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 660 - 765
Alignment:
| Q |
20 |
ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgc |
119 |
Q |
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||||||||||| ||||||||||||| |||||| || ||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||| ||||| |
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| T |
660 |
ccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcactggttaaaaagactcttgt |
759 |
T |
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| Q |
120 |
tgagat |
125 |
Q |
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|||||| |
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| T |
760 |
tgagat |
765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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