View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_219 (Length: 211)
Name: NF9005_low_219
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_219 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 27395080 - 27395227
Alignment:
| Q |
49 |
ggtaaacgtaaccggaaaaccgatgaagctgcttc---ttcttccgttgttgttgttcgaaagagtcaccgtataagaagaacaacaacaaaagctcccg |
145 |
Q |
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| T |
27395080 |
ggtaaacgtaaccggaaaaccgatgaagctgcttcttcttcttccgttgttgttgttcgaaagagtcaccgtataagaagaacaacaactaaagctcccg |
27395179 |
T |
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| Q |
146 |
tattaatagacaagaagaagaatcttggtagtggtggtggtgatgatg |
193 |
Q |
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| T |
27395180 |
tcttaacagacaagaagaagaatcttggtagtggtggtggtgatgatg |
27395227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 498165 - 498039
Alignment:
| Q |
51 |
taaacgtaaccggaaaaccgatgaagctg---cttcttcttccgttgttgttgttcgaaagagtcaccgtataagaagaacaacaacaaaa---gctccc |
144 |
Q |
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| T |
498165 |
taaacgcaaccgaaaaaccgaagaagttgtttcttcttcttccgttgttgttgttcgaaagagtcaacatataagaataacaacaacaacaaaggctctc |
498066 |
T |
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| Q |
145 |
gtattaatagacaagaagaagaatctt |
171 |
Q |
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|| || |||||||||||||||||||| |
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| T |
498065 |
gtcctagtagacaagaagaagaatctt |
498039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 498329 - 498263
Alignment:
| Q |
80 |
cttcttcttccgttgttgttgttcgaaagagtcaccgtataagaagaacaacaacaaaagctcccgt |
146 |
Q |
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| T |
498329 |
cttcttcttccgttggtgctgttcgaaagagtcaacatatacgaataacaacaacaaaggctcccgt |
498263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 498786 - 498842
Alignment:
| Q |
80 |
cttcttcttccgttgttgttgttcgaaagagtcaccgtataagaagaacaacaacaaa |
137 |
Q |
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| T |
498786 |
cttcttcttccgctgttgctgttcgaaagagtca-aatataagaataacaacaacaaa |
498842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 498985 - 499018
Alignment:
| Q |
80 |
cttcttcttccgttgttgttgttcgaaagagtca |
113 |
Q |
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| T |
498985 |
cttcttcttccgttgttgctgttcgaaagagtca |
499018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 1096202 - 1096260
Alignment:
| Q |
80 |
cttcttcttccgttgttgttgttcgaaagagtcaccgtataagaagaacaacaacaaaa |
138 |
Q |
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| T |
1096202 |
cttcttcttccgttgttgctgttcgaaagagtcaacgtataagaagaacaacaacaaaa |
1096260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 326169 - 326112
Alignment:
| Q |
75 |
agctgcttcttcttccgttgttgttgttcgaaagagtcaccgtataagaagaacaacaa |
133 |
Q |
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| T |
326169 |
agctgcttcttctttcattgttgttgttcgaaagagt-aacatataagaagaacaacaa |
326112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 1096196 - 1096156
Alignment:
| Q |
97 |
gttgttcgaaagagtc-accgtataagaagaacaacaacaa |
136 |
Q |
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| T |
1096196 |
gttgttcgaaagagtctaacgtataagaagaacaacaacaa |
1096156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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