View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9005_low_22 (Length: 620)
Name: NF9005_low_22
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 19 - 608
Target Start/End: Original strand, 43672146 - 43672735
Alignment:
| Q |
19 |
catgcaccctcacctcgccggaactaaacccaactccgacaccgctaactttgttctcaaccacttcacttccttaaaccttaaaacccacacaacatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43672146 |
catgcaccctcacctcgccggaactaaacccaactccgacaccgctaactttgttctcaaccacttcatttccttaaaccttaaaacccacacaacatct |
43672245 |
T |
|
| Q |
119 |
tacaacgttcttctctcttatccattacactcttcactctccatgcactttaacgatggttcatcttccaaccttggattaaccgaaccgggttcatccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43672246 |
tacaacgttcttctctcttatccattacactcttcactctccatgcactttaacgatggttcatcttccaaccttggattaaccgaaccgggttcatctg |
43672345 |
T |
|
| Q |
219 |
gttcagacatggttcatgcctaccatgcttactcaccatccggttcagtttatgctaaggcggtgtttgtgaactacggaagagatagagactaccgtgc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43672346 |
gttcagacatggttcatgcctaccatgcttattcaccatccggttcagtttatgctaaggcggtgtttgtgaactacggaagagatagagactaccgtgc |
43672445 |
T |
|
| Q |
319 |
agttggcgtaagcattaagggatgtatagtgatagtaagaaaaggtggtggtttagggaggaacacggtggttgaaaaggctgaggaaaacggtgctgta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43672446 |
agttggcgtaagcattaagggatgtatagtgatagtaagaaaaggtggtggtttagggaggaacacggtggttgaaaaggctgaggaaaacggtgctgta |
43672545 |
T |
|
| Q |
419 |
gcggttctggtttataatgatgagaatgacacgtggcgtgatgggtttgagagaggtcacgtgatgaaaggtgtaggggacccacttagtcctggttggg |
518 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43672546 |
gcggttctagtttataatgatgagaatgacacgtggcgtaatgggtttgagagaggtcacgtgatgaaaggtgtaggggacccacttagtcctggttggg |
43672645 |
T |
|
| Q |
519 |
gtagtgttgaaggtagtgagaagttgagtttggatgataatgaagttttgaaaaggttccctaaaattccatctatgccactctctgctc |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43672646 |
gtagtgttgaaggtagtgagaagttgagtttggatgataatgaagttttgaaaaggttccctaaaattccatctatgccactctctgctc |
43672735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University