View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_223 (Length: 208)
Name: NF9005_low_223
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_223 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 25726534 - 25726701
Alignment:
| Q |
23 |
tattgacctaataagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25726534 |
tattgacctaataagtaatctcgtatggatgtacacgcacgcacacgacacttttcatttgtatctacacaacagaattgcatcagtatactcactctaa |
25726633 |
T |
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| Q |
123 |
aatttgaaaagaaaaataatgcttgt-agtaaaaacaatgaagtcggacacaaattttacagaagtta |
189 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
25726634 |
aatttcaaaagaaaaataatgcttgtaagtaaaaacaatgaagtcagacacaacttttacagaagtta |
25726701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 25226635 - 25226468
Alignment:
| Q |
23 |
tattgacctaataagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaa |
122 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
25226635 |
tattgacctaataagtaatctcgcatggatgtacacgcacgcacacgatacttttcatttgtatctacacaacaaaattgcatcagtatactcactctaa |
25226536 |
T |
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| Q |
123 |
aatttgaaaagaaaaataatgcttg-tagtaaaaacaatgaagtcggacacaaattttacagaagtta |
189 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
25226535 |
aatttgaaaagaaaaataatgcttgcaagtaaaaacaatgaagtcagacaaaacttttacagaagtta |
25226468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 25290791 - 25290624
Alignment:
| Q |
23 |
tattgacctaataagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaa |
122 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
25290791 |
tattgacctaataagtaatctcgcatggatgtacacgcacgcacacgatacttttcatttgtatctacacaacaaaattgcatcagtatactcactctaa |
25290692 |
T |
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| Q |
123 |
aatttgaaaagaaaaataatgcttg-tagtaaaaacaatgaagtcggacacaaattttacagaagtta |
189 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
25290691 |
aatttgaaaagaaaaataatgcttgcaagtaaaaacaatgaagtcagacaaaacttttacagaagtta |
25290624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 25220624 - 25220778
Alignment:
| Q |
35 |
aagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaaaatttgaaaaga |
134 |
Q |
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|||||||||||||||||||||||||||| ||| ||| | ||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25220624 |
aagtaatctcgtatggatgtacacgcacacacccgaaa-tttgcatttctatctacacaacagaattgcatcagtatactcactctaaattttgaaaaga |
25220722 |
T |
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| Q |
135 |
aaaataatgcttgt-agtaaaaacaatgaagtcggacacaaattttacagaagtta |
189 |
Q |
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|||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |
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| T |
25220723 |
aaaataatgcttgtaagtgaaaacaatgaagtcagacacaacttttacagaagtta |
25220778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 25284779 - 25284933
Alignment:
| Q |
35 |
aagtaatctcgtatggatgtacacgcacgcacacgatacttttcatttgtaactacacaacagaattgcatcagtatactcactctaaaatttgaaaaga |
134 |
Q |
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|||||||||||||||||||||||||||| ||| ||| | ||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25284779 |
aagtaatctcgtatggatgtacacgcacacacccgaaa-tttgcatttctatctacacaacagaattgcatcagtatactcactctaaattttgaaaaga |
25284877 |
T |
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| Q |
135 |
aaaataatgcttgt-agtaaaaacaatgaagtcggacacaaattttacagaagtta |
189 |
Q |
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|||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |
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| T |
25284878 |
aaaataatgcttgtaagtgaaaacaatgaagtcagacacaacttttacagaagtta |
25284933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 14397074 - 14397119
Alignment:
| Q |
72 |
acttttcatttgtaactacacaacagaattgcatcagtatactcac |
117 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
14397074 |
acttttcatttgtatctacacaacagaactgcatcagtatactcac |
14397119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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