View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9005_low_226 (Length: 207)
Name: NF9005_low_226
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_226 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 41341487 - 41341675
Alignment:
| Q |
1 |
atcaagtgatagtacctaggacgatcaccctgtggaccaccaaaaggtctaccaggtggcttagcttgtttcttcaaagtagcaggaacaatctcagaag |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41341487 |
atcaagtgataatacctaggacgatcaccctgtggaccaccaaaaggtctaccaggtggcttagcttgtttcttcaaagtagcaggaacaatctcagaag |
41341586 |
T |
|
| Q |
101 |
gaagattcaagtaagttctgagaaactcaattccatcatttgtgagaaaccagtaataattcatccaagcaaaggtttctctaacatat |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41341587 |
gaagattcaagtaagttctgagaaactcaattccatcatttgtgagaaaccagtaataattcatccaagcaaaggtttctctaacatat |
41341675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 2602276 - 2602100
Alignment:
| Q |
13 |
tacctaggacgatcaccctgtggaccaccaaaaggtctaccaggtggcttagcttgtttcttcaaagtagcaggaacaatctcagaaggaagattcaagt |
112 |
Q |
| |
|
|||||||| |||||||| | ||||||||||| || || |||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
2602276 |
tacctagggcgatcaccaggaggaccaccaaagggccttccagctggcttagcctgcttcttcaaagtagcaggaacaatctcagatggaagattcaaat |
2602177 |
T |
|
| Q |
113 |
aagttctgagaaactcaattccatcatttgtgagaaaccagtaataattcatccaagcaaaggtttctctaacatat |
189 |
Q |
| |
|
|||| ||||||||||||||||||||||| || || ||||||||||| |||||||||||||| ||||| || |||||| |
|
|
| T |
2602176 |
aagtcctgagaaactcaattccatcattggtaaggaaccagtaatagttcatccaagcaaaagtttccctcacatat |
2602100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University