View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_24 (Length: 592)

Name: NF9005_low_24
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_24
NF9005_low_24
[»] chr3 (9 HSPs)
chr3 (16-573)||(30667113-30667664)
chr3 (90-229)||(43116477-43116616)
chr3 (67-156)||(22232781-22232870)
chr3 (59-143)||(25453877-25453961)
chr3 (91-159)||(28306110-28306178)
chr3 (91-143)||(31337451-31337503)
chr3 (60-111)||(44747427-44747478)
chr3 (91-143)||(1816551-1816603)
chr3 (59-111)||(42808972-42809024)
[»] chr5 (14 HSPs)
chr5 (67-159)||(36639474-36639566)
chr5 (74-154)||(12975304-12975384)
chr5 (67-154)||(31694475-31694562)
chr5 (175-229)||(6725119-6725173)
chr5 (60-141)||(41016149-41016230)
chr5 (59-111)||(11707055-11707107)
chr5 (91-154)||(14295463-14295526)
chr5 (99-154)||(28586824-28586879)
chr5 (91-153)||(16889693-16889755)
chr5 (94-143)||(32059642-32059691)
chr5 (93-141)||(3977278-3977326)
chr5 (91-143)||(18857450-18857502)
chr5 (129-229)||(20982223-20982323)
chr5 (91-143)||(41277400-41277452)
[»] chr1 (7 HSPs)
chr1 (91-143)||(4548689-4548741)
chr1 (94-156)||(40304107-40304169)
chr1 (61-154)||(4576762-4576855)
chr1 (59-111)||(7137016-7137068)
chr1 (94-154)||(7273992-7274052)
chr1 (59-111)||(7472311-7472363)
chr1 (59-111)||(34290236-34290288)
[»] chr7 (10 HSPs)
chr7 (91-229)||(28340446-28340584)
chr7 (91-214)||(47003984-47004107)
chr7 (59-143)||(12110328-12110412)
chr7 (174-229)||(2012765-2012820)
chr7 (67-154)||(17989049-17989136)
chr7 (191-229)||(504114-504152)
chr7 (94-143)||(31338476-31338525)
chr7 (91-140)||(44821930-44821979)
chr7 (59-111)||(18749835-18749887)
chr7 (67-143)||(30456476-30456552)
[»] chr6 (8 HSPs)
chr6 (59-154)||(4006671-4006766)
chr6 (121-202)||(31672548-31672629)
chr6 (91-154)||(2027456-2027519)
chr6 (174-227)||(5730589-5730642)
chr6 (180-229)||(30004784-30004833)
chr6 (94-202)||(7354113-7354221)
chr6 (59-143)||(10154189-10154273)
chr6 (59-143)||(27894015-27894098)
[»] chr4 (10 HSPs)
chr4 (59-141)||(18628561-18628643)
chr4 (92-154)||(53626733-53626795)
chr4 (58-143)||(2996541-2996626)
chr4 (91-156)||(49085944-49086009)
chr4 (59-111)||(47800623-47800675)
chr4 (91-154)||(30207621-30207683)
chr4 (59-110)||(52746858-52746909)
chr4 (91-143)||(19429538-19429590)
chr4 (106-202)||(46013365-46013461)
chr4 (106-202)||(46247127-46247223)
[»] chr8 (10 HSPs)
chr8 (59-111)||(27028831-27028883)
chr8 (124-203)||(39392744-39392823)
chr8 (94-132)||(32143098-32143136)
chr8 (59-112)||(5069696-5069749)
chr8 (67-156)||(37822684-37822773)
chr8 (59-143)||(5070985-5071069)
chr8 (91-143)||(6509353-6509405)
chr8 (59-143)||(33714254-33714337)
chr8 (59-111)||(37353267-37353319)
chr8 (94-154)||(40728471-40728531)
[»] chr2 (8 HSPs)
chr2 (67-143)||(36863651-36863727)
chr2 (67-153)||(14666506-14666592)
chr2 (87-152)||(40145421-40145486)
chr2 (59-112)||(43985021-43985074)
chr2 (59-111)||(9174815-9174867)
chr2 (67-143)||(9556207-9556283)
chr2 (59-111)||(36852472-36852524)
chr2 (173-221)||(43808466-43808514)


Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 573
Target Start/End: Complemental strand, 30667664 - 30667113
Alignment:
Q  16 acctgtgagagtttatagtagtttaagacatattcgtagatgtttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||| | |||||||    
T  30667664 acctgtgagagtttatagtagtttaagacatattcgtagatgtttttcagattgttttcataagcttta------------tgaaaacagataataagtt 30667577  T
Q  116 gtataaaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatcacttatgctataaacactcaattaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30667576 gtataaaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatcacttatgctataaacactcaattaaa 30667477  T
Q  216 ctatttatccaaacggatccgaatatagaaatcatgtaaagctaaaaaagatatataggagtaatagatttcaag-----ggtctagtcgatcacgacag 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  30667476 ctatttatccaaacggatccgaatatagaaatcatgtaaagctaaaaaagatatataggagtaatagatttcaaggagttggtctagtcgatcacgacag 30667377  T
Q  311 aacttgtatctaagatttttgaatcgatacaagttctatcatgatccaatagattttttcgcctaattatc-nnnnnnntgatgtacaatagataagtaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||        |||||||||||||||||||||    
T  30667376 aacttgtatctaagatttttgaatcgatacaagttctatcatgatccaatagatttttttgactaattatcaaaaaaaatgatgtacaatagataagtaa 30667277  T
Q  410 aaagaggcggaggtaaattgtaatttgtaagaattgaactcttgataatgtgaagtgttgcgatgttgcagatgagcttgaatggctcagtagtagctgg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30667276 aaagaggcggaggtaaattgtaatttgtaagaattgaactcttaataatgtgaagtgttgcgatgttgcagatgagcttgaatggctcagtagtagctgg 30667177  T
Q  510 accaacagtttctaattcagctttcttcggcacaagcttgaagaagcttaccgcaagacttcca 573  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30667176 accaacagtttctaattcagctttcttcggcacaagcttgaaaaagcttaccgcaagacttcca 30667113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 43116477 - 43116616
Alignment:
Q  90 aagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatc 189  Q
    ||||||||||||||  ||||||  || ||| ||||  |||||| || |||||||  ||||||||| | || | ||||||||  ||||||||||||||| |    
T  43116477 aagcttatgaaaacgacttatagcttatatgaaaattgtttgatttgattttatcttttgttatagaaatagcttacacataaacacttgtatgataaac 43116576  T
Q  190 acttatgctataaacactcaattaaactatttatccaaac 229  Q
    | |||||||||||||||| ||||||  | |||||||||||    
T  43116577 atttatgctataaacactaaattaagttgtttatccaaac 43116616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 22232870 - 22232781
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatata 156  Q
    ||||||||||||||  |||  || |||||||||||| ||||||  | || ||| |||||||||||| ||||||||||  |||||||||||    
T  22232870 ttattttcataagccctacatgatagcttatgaaaatagcttacgacttatatgaaaacagtttgactttattttatcatttgttatata 22232781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 25453877 - 25453961
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||||| ||||||||||||||||| |  || || ||||||||| || ||||| ||| ||  |||||||||||| ||||||||||    
T  25453877 ttttcagcttattttcataagctttccaggatagtttatgaaaataggttataggttatacgaaaacagtttgactttattttat 25453961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 28306178 - 28306110
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatatagat 159  Q
    |||||||||||||| ||| ||| || ||| |||||||||||| ||||||||| | ||||||||| ||||    
T  28306178 agcttatgaaaacaacttgtaacttatatgaaaacagtttgactttattttactttttgttatagagat 28306110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 31337451 - 31337503
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||||| ||| ||||||| || |||||||||||||||| ||||||||||    
T  31337451 agcttatgaatacaacttataacttatataaaaacagtttgactttattttat 31337503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 44747427 - 44747478
Alignment:
Q  60 tttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    |||||| ||||||||||||| ||| | ||| |||||||||||||||||||||    
T  44747427 tttcagcttattttcataagttttccaagatagcttatgaaaacagcttata 44747478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 1816603 - 1816551
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||||||||| ||||||  || || ||||||||||||| ||||||||||    
T  1816603 agcttatgaaaacaacttatatcttatacaaaaacagtttgactttattttat 1816551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 42809024 - 42808972
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| ||||||| | ||||| | ||||| |||||||||||||||||||||    
T  42809024 ttttcagcttattttgacaagctctccgagagagcttatgaaaacagcttata 42808972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 36639566 - 36639474
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatatagat 159  Q
    ||||||||||||||| | | ||| |||||||||||||||  ||||| |||||| |||||| ||||| ||||||||||  ||||||||| ||||    
T  36639566 ttattttcataagctcttcaagatagcttatgaaaacagtctataacttgtatgaaaacattttgattttattttatcttttgttataaagat 36639474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 12975384 - 12975304
Alignment:
Q  74 cataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    |||||||| | | ||| |||||||||| ||||||||||  || ||| |||||| ||||| |||||||||||||||||||||    
T  12975384 cataagctctccaagatagcttatgaacacagcttatagcttatatgaaaacaatttgattttattttattctttgttata 12975304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 31694562 - 31694475
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    ||||||||||||||| ||| ||  |||||| || |||| ||||||  ||||||||||||||||||| |||| |||||  |||||||||    
T  31694562 ttattttcataagctctacaagtgagcttaagagaacaacttatagtttgtataaaaacagtttgactttagtttatgttttgttata 31694475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 6725173 - 6725119
Alignment:
Q  175 acttgtatgataatcacttatgctataaacactcaattaaactatttatccaaac 229  Q
    |||| |||||||| |||||||||||||| |||| ||||||| |||||||||||||    
T  6725173 acttatatgataagcacttatgctataagcacttaattaaattatttatccaaac 6725119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 41016230 - 41016149
Alignment:
Q  60 tttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttatttt 141  Q
    |||||| ||||||||||||||||| |  ||  |||| |||||||| ||||||  || ||| |||||||||||||||||||||    
T  41016230 tttcagcttattttcataagctttccatgatggcttgtgaaaacaacttatagcttatatgaaaacagtttgaatttatttt 41016149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 11707107 - 11707055
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| ||||||||| ||||| ||| ||| |||||||||||||||||||||    
T  11707107 ttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 14295526 - 14295463
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    |||||| ||||||||||||||  || ||| |||||||||||| ||||||||||  |||||||||    
T  14295526 agcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttata 14295463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 28586824 - 28586879
Alignment:
Q  99 aaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    |||||||||||||| || ||| |||||||||||| ||||||||||  |||||||||    
T  28586824 aaaacagcttataatttatatgaaaacagtttgactttattttatcttttgttata 28586879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 16889755 - 16889693
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttat 153  Q
    |||||||||||||||||||||  || |||||||||||||||| || | |||||  ||||||||    
T  16889755 agcttatgaaaacagcttatagcttctataaaaacagtttgacttaagtttatcttttgttat 16889693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 32059642 - 32059691
Alignment:
Q  94 ttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||||||||||||||||  || ||| |||||||||||| ||||||||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttat 32059691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 3977326 - 3977278
Alignment:
Q  93 cttatgaaaacagcttataagttgtataaaaacagtttgaatttatttt 141  Q
    ||||||||||||||||||  ||| || ||||||||||||| ||||||||    
T  3977326 cttatgaaaacagcttatgggttatacaaaaacagtttgattttatttt 3977278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 18857450 - 18857502
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||||||||||||||||  || || ||||||| ||||| ||||||||||    
T  18857450 agcttatgaaaacagcttatagattatagaaaaacaatttgactttattttat 18857502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 20982223 - 20982323
Alignment:
Q  129 ttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatcacttatgctataaacactcaattaaactatttatccaaa 228  Q
    |||| |||||||||| |||||||||| | || | ||| ||||   ||||| |||||||| |||||||||||||| |||| ||| ||  | ||||||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagttgtttatccaaa 20982322  T
Q  229 c 229  Q
    |    
T  20982323 c 20982323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 41277400 - 41277452
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||||||||| ||| ||| || ||| |||||||||||| ||||||||||    
T  41277400 agcttatgaaaacaacttttaacttatatgaaaacagtttgactttattttat 41277452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 4548741 - 4548689
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||||||||    
T  4548741 agcttatgaaaacagcttatgacttgtataaaaacagtttgactttattttat 4548689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 40304107 - 40304169
Alignment:
Q  94 ttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatata 156  Q
    ||||||||||||||||||| || ||| |||||| | ||| ||||||||||  |||||||||||    
T  40304107 ttatgaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttatata 40304169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 4576855 - 4576762
Alignment:
Q  61 ttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    ||||| ||||||||||||| | | | | | |||||||||||||||||||||| ||||| ||||| | ||| | ||||||| ||  |||||||||    
T  4576855 ttcagcttattttcataagttattcaatatagcttatgaaaacagcttataacttgtacaaaaatattttaactttatttaatcttttgttata 4576762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7137016 - 7137068
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| ||||||||||||| | | | ||| |||||||||||||||||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 7273992 - 7274052
Alignment:
Q  94 ttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    ||||| ||||||||||||| |||||| |||||| ||||| ||||||| ||  |||||||||    
T  7273992 ttatggaaacagcttataacttgtatgaaaacaatttgactttatttcatcttttgttata 7274052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 7472363 - 7472311
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| ||||||||||||||| | | ||| |||||||| ||||||||||||    
T  7472363 ttttcagcttattttcataagctctccaagatagcttatggaaacagcttata 7472311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 34290288 - 34290236
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| ||||||||||||| | | | ||| |||||||||||||||||||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttata 34290236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 28340446 - 28340584
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatca 190  Q
    ||||| |||||||| ||||||| ||  || |||||||||||| ||||||||||| ||||||  | | || | ||| ||||| | ||||||| ||||| ||    
T  28340446 agcttctgaaaacaacttataacttacatgaaaacagtttgactttattttattgtttgttgaagaaatagcttatacattaatacttgtacgataaaca 28340545  T
Q  191 cttatgctataaacactcaattaaactatttatccaaac 229  Q
    || ||||||||| |||| |||||| || | |||||||||    
T  28340546 ctaatgctataagcacttaattaagctgtatatccaaac 28340584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 47004107 - 47003984
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatca 190  Q
    |||||||||||||||||||||  |  |||||||| ||||||| ||||||||||   |||||||| | || | ||||| ||  |||||| |||||||| ||    
T  47004107 agcttatgaaaacagcttatagttcatataaaaatagtttgactttattttatctattgttatagaaatagcttacatataaacacttatatgataaaca 47004008  T
Q  191 cttatgctataaacactcaattaa 214  Q
     || |||||||| |||| ||||||    
T  47004007 tttttgctataagcacttaattaa 47003984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 12110412 - 12110328
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||| |||||||||||||||| | | | ||| |||||||||||||||||||||  || ||  |||||| ||||| ||||||||||    
T  12110412 tttttagattattttcataagttcttcaagatagcttatgaaaacagcttatagcttataccaaaacaatttgactttattttat 12110328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 2012765 - 2012820
Alignment:
Q  174 cacttgtatgataatcacttatgctataaacactcaattaaactatttatccaaac 229  Q
    |||||||||||||| ||| |||||||||| |||| |||||| || |||||||||||    
T  2012765 cacttgtatgataagcacctatgctataagcacttaattaagctttttatccaaac 2012820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 17989049 - 17989136
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    ||||||||||||||| | |  || ||||||||||||||  |||||  || ||| |||||||||||| ||||||||||  |||||||||    
T  17989049 ttattttcataagctcttcaggagagcttatgaaaacaaattatagtttatatgaaaacagtttgactttattttatattttgttata 17989136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 504152 - 504114
Alignment:
Q  191 cttatgctataaacactcaattaaactatttatccaaac 229  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  504152 cttatgctataagcacttaattaaactatttatccaaac 504114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 31338525 - 31338476
Alignment:
Q  94 ttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||| ||||| ||||||| || |||||||||||||||| ||||||||||    
T  31338525 ttatggaaacaacttataacttatataaaaacagtttgactttattttat 31338476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 44821979 - 44821930
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattt 140  Q
    |||||||||||||||||||||| || || ||||||| ||||| |||||||    
T  44821979 agcttatgaaaacagcttataacttatacaaaaacaatttgactttattt 44821930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 18749835 - 18749887
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| |||||| |||||| ||| || || |||||||||||||||||||||    
T  18749835 ttttcagcttatttccataagttttccgtgatagcttatgaaaacagcttata 18749887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 30456476 - 30456552
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||||||||||||| | | ||| || ||||||||||  ||||||| || ||| |||||| ||||| ||||||||||    
T  30456476 ttattttcataagctctccaagatagtttatgaaaaccacttataacttatatgaaaacaatttgactttattttat 30456552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 4006766 - 4006671
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    ||||||| |||||||||||| || |  | || |||||||||||||| ||||||  || |||||||||| ||||| ||||||||||  |||||||||    
T  4006766 ttttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttata 4006671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 31672548 - 31672629
Alignment:
Q  121 aaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatcacttatgctataa 202  Q
    |||||||||||| ||||||||||| ||||| ||  | || ||||| ||||  ||||||||||||||||| |||| |||||||    
T  31672548 aaaacagtttgactttattttattttttgtcatggaaatagtttatacataaacacttgtatgataatcgcttaagctataa 31672629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 2027456 - 2027519
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    ||||||||| ||||||||||| ||| ||| |||| ||||||| ||||||||||  |||||||||    
T  2027456 agcttatgagaacagcttataggttatatgaaaatagtttgactttattttatcttttgttata 2027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 5730642 - 5730589
Alignment:
Q  174 cacttgtatgataatcacttatgctataaacactcaattaaactatttatccaa 227  Q
    |||||||||||||| || || |||||||| | || |||||||||||||||||||    
T  5730642 cacttgtatgataaacatttttgctataagcgcttaattaaactatttatccaa 5730589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 30004833 - 30004784
Alignment:
Q  180 tatgataatcacttatgctataaacactcaattaaactatttatccaaac 229  Q
    |||||||||  |||||||||||| |||||||||||| | |||||||||||    
T  30004833 tatgataatttcttatgctataagcactcaattaaattgtttatccaaac 30004784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 7354221 - 7354113
Alignment:
Q  94 ttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatcactt 193  Q
    ||||||||||||||| ||  || ||| |||| |||| || ||||||||||  ||||||||| | || ||||| ||||  | |||||||||| || || ||    
T  7354221 ttatgaaaacagcttgtatcttatatgaaaatagttcgattttattttatcttttgttatagaaatagtttatacatgaaaacttgtatgaaaagcattt 7354122  T
Q  194 atgctataa 202  Q
    |||||||||    
T  7354121 atgctataa 7354113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 10154273 - 10154189
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||||| |||||| |||||||||| |  |  ||| |||||||  ||||||||| || ||| |||||||||||| ||||||||||    
T  10154273 ttttcagtttatttccataagcttttcatgctagcctatgaaagtagcttataacttatatgaaaacagtttgactttattttat 10154189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 27894098 - 27894015
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||||| ||||||||||||||||| | ||| | |||||||||||| || |||  || ||| |||||| ||||| ||||||||||    
T  27894098 ttttcagcttattttcataagcttttcaagatatcttatgaaaaca-ctaatagtttatattaaaacaatttgactttattttat 27894015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 18628561 - 18628643
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttatttt 141  Q
    ||||||| |||||| |||||||| | | ||| | ||||||||||||| |||||| || |||||||||||||||| | ||||||    
T  18628561 ttttcagcttatttccataagctctccaagataacttatgaaaacagtttataacttatataaaaacagtttgactatatttt 18628643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 53626795 - 53626733
Alignment:
Q  92 gcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    ||||||||||||||||||||  || ||| |||||| ||||||||||||||||  |||||||||    
T  53626795 gcttatgaaaacagcttatagcttatatgaaaacattttgaatttattttatcttttgttata 53626733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 2996626 - 2996541
Alignment:
Q  58 tttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||  ||||||||||| ||| | | ||| |||||||||||||| ||||||| || |||||||||| ||||| | ||||||||    
T  2996626 tttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttatataaaaacaatttgactgtattttat 2996541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 49086009 - 49085944
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatata 156  Q
    |||||||||||||| ||||||| |||||| |||| |||||||  |||||||||  |||||||||||    
T  49086009 agcttatgaaaacaacttataacttgtatgaaaatagtttgacattattttatcttttgttatata 49085944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 47800675 - 47800623
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| ||||||||||||||| | | ||| |||||||||||||||||||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 30207621 - 30207683
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    |||||||||||||| ||||||  || ||| ||||||||||| |||||||||||| |||||||||    
T  30207621 agcttatgaaaacaacttatagcttatatgaaaacagtttg-atttattttattttttgttata 30207683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 52746858 - 52746909
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttat 110  Q
    ||||||| | |||||||||||| |||| ||| ||||||||||||||||||||    
T  52746858 ttttcagctgattttcataagccttacaagatagcttatgaaaacagcttat 52746909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 19429538 - 19429590
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||||||| ||||||  | || |||||||||||||||| ||||||||||    
T  19429538 agcttatgaaaagagcttacgacttatataaaaacagtttgactttattttat 19429590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 46013365 - 46013461
Alignment:
Q  106 cttataagttgtataaaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatcacttatgctataa 202  Q
    ||||||| || |||||||||||||||| ||||||||||  ||||||  | | || ||||||||||  |||||| | | || ||||||||| ||||||    
T  46013365 cttataacttatataaaaacagtttgactttattttatcttttgttccagaaatagtttacacataaacacttatttaattatcacttatactataa 46013461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 46247223 - 46247127
Alignment:
Q  106 cttataagttgtataaaaacagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatcacttatgctataa 202  Q
    ||||||| || |||||||||||||||| ||||||||||  ||||||  | | || ||||||||||  |||||| | | || ||||||||| ||||||    
T  46247223 cttataatttatataaaaacagtttgactttattttatcttttgttccagaaatagtttacacataaacacttatttaattatcacttatactataa 46247127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 27028883 - 27028831
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| ||||||||||||||| | | ||| |||||||||||||||||||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttata 27028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 39392744 - 39392823
Alignment:
Q  124 acagtttgaatttattttattctttgttatatagatggtttacacatttacacttgtatgataatcacttatgctataaa 203  Q
    ||||||||| ||||||||||  ||||||||| | || ||||| ||||   ||||| |||||||| |||||||||||||||    
T  39392744 acagtttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcacttatgctataaa 39392823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 32143098 - 32143136
Alignment:
Q  94 ttatgaaaacagcttataagttgtataaaaacagtttga 132  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  32143098 ttatgaaaaccgcttataacttgtataaaaacagtttga 32143136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 5069749 - 5069696
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataa 112  Q
    ||||||| |||||||||||||||||   ||| | ||||||||||||||||||||    
T  5069749 ttttcagcttattttcataagctttcgaagatatcttatgaaaacagcttataa 5069696  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 37822684 - 37822773
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttatata 156  Q
    ||||||||||||||| | | ||| | ||| |  ||||||||||||  || |||  |||||||||||||||| |||||| |||||||||||    
T  37822684 ttattttcataagctcttcaagataacttctataaacagcttatatcttatatgtaaacagtttgaatttaatttattttttgttatata 37822773  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 5070985 - 5071069
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||||| |||||| |  ||||| | ||||| | |||||||||||| |||| ||||| ||| |||| ||||||| ||||||||||    
T  5070985 ttttcagcttatttccgaaagctctccgagagaccttatgaaaacatcttacaagttatatgaaaaaagtttgactttattttat 5071069  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 6509353 - 6509405
Alignment:
Q  91 agcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||||||||||||||||  || |||||| ||| ||||| ||||||||||    
T  6509353 agcttatgaaaacagcttatagcttatataaatacaatttgactttattttat 6509405  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 33714254 - 33714337
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||||| ||||||| ||||||| | | ||| |||||||||||| ||||||||  |||||  |||| ||||||| ||||||||||    
T  33714254 ttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatagattgta-caaaatagtttgactttattttat 33714337  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 37353267 - 37353319
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||||||||||||||||||| |   ||| |||||| ||||||||||||||    
T  37353267 ttttcagattattttcataagctctcaaagatagcttaagaaaacagcttata 37353319  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 40728471 - 40728531
Alignment:
Q  94 ttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttata 154  Q
    |||| ||||||| |||| | ||||| ||||||||||||| ||||||||||  |||||||||    
T  40728471 ttattaaaacaggttatgacttgtaaaaaaacagtttgactttattttatcttttgttata 40728531  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 36863651 - 36863727
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    ||||||||||||||| | | ||| ||||||||||||||  |||||| || ||||||||  |||||| ||||||||||    
T  36863651 ttattttcataagctctccaagatagcttatgaaaacaatttataacttatataaaaattgtttgactttattttat 36863727  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 14666592 - 14666506
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgttat 153  Q
    |||||||||||||| |  | ||| ||||| |||||||| ||||||| || ||| ||| |||||||| ||||||||||  ||||||||    
T  14666592 ttattttcataagcataccaagatagcttgtgaaaacaacttataacttatatgaaatcagtttgactttattttatcttttgttat 14666506  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 40145486 - 40145421
Alignment:
Q  87 agaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttattctttgtta 152  Q
    |||||||||||||||||| ||||||| ||  |||||||||  |||| ||||||||||  |||||||    
T  40145486 agaaagcttatgaaaacaacttataacttacataaaaacaacttgactttattttatcttttgtta 40145421  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 43985021 - 43985074
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttataa 112  Q
    ||||||| ||||||||||||||| | | ||| |||||||||||||| |||||||    
T  43985021 ttttcagcttattttcataagctcttcaagatagcttatgaaaacaacttataa 43985074  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 9174867 - 9174815
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    ||||||| ||||||||||||||| |   ||| |||||||||||||||||||||    
T  9174867 ttttcagcttattttcataagctctgtaagatagcttatgaaaacagcttata 9174815  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 9556283 - 9556207
Alignment:
Q  67 ttattttcataagctttacgagaaagcttatgaaaacagcttataagttgtataaaaacagtttgaatttattttat 143  Q
    |||||||||||||||||    || ||||||||||||||| |||||  |||||| ||||||  |||| ||||||||||    
T  9556283 ttattttcataagctttctaggatagcttatgaaaacagtttatagcttgtatgaaaacacgttgactttattttat 9556207  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 36852524 - 36852472
Alignment:
Q  59 ttttcagattattttcataagctttacgagaaagcttatgaaaacagcttata 111  Q
    |||||||||||||| |||||||| | | ||| ||||||||||||||| |||||    
T  36852524 ttttcagattatttccataagctctccaagatagcttatgaaaacagtttata 36852472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 43808514 - 43808466
Alignment:
Q  173 acacttgtatgataatcacttatgctataaacactcaattaaactattt 221  Q
    |||||| |||||||  | ||||||||||||||||| |||||||||||||    
T  43808514 acacttatatgatacgcgcttatgctataaacacttaattaaactattt 43808466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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