View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_27 (Length: 591)
Name: NF9005_low_27
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 46 - 591
Target Start/End: Original strand, 52055509 - 52056070
Alignment:
| Q |
46 |
caggaccatgcataacgttagatatcttcattttatttgcattcctcactcatgcatcttattacatttaaatagcattactacaagaaaatagggttat |
145 |
Q |
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| T |
52055509 |
caggaccatgcataacgttagatatcttcattttatttgcatt----gctcatgcatcttattacatttaaatagcattactacaagaaaatagggttat |
52055604 |
T |
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| Q |
146 |
taattattggccattcagcccaacaaaatacacatcaacacagccaaaagatgtggtcaaagtgggtccaaagtgagcgagattttaaatcatactctga |
245 |
Q |
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| T |
52055605 |
taattattggccattcagcccaacaaaatacacatcaacacagccaaaagatgtggtcaaagtgggtccaaagtgagtgagattttaaatcatactctga |
52055704 |
T |
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| Q |
246 |
gatatagtatatctttttactttaattgaaagatcatatcctttagactttgctaacgattttgctagcataaactctttttcttaaaactttattataa |
345 |
Q |
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| T |
52055705 |
gatatagtatatctttttactttaattgaaagatcatatcctttagactttgctaacaattttgctagcataaactctttttcttaaaactttattataa |
52055804 |
T |
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| Q |
346 |
agatgtcaatgtcattcagagaaatatatatgatagtataggaaataatttgtaccctctgactcaggccatgtaatgcaataaagaagtgtcactctca |
445 |
Q |
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| T |
52055805 |
agatgtcaatgtcattcagagaaatatatatgatagtataggaaataatttgtatcctctgactcaggccatgtaatgcaataaagaagtgtcactctca |
52055904 |
T |
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| Q |
446 |
tgacttataacttgtgtggtcatcatggaaataaaggcaagctaaaacaac----------------gtccaattgtgcaacagtgcaaagctttagt-a |
528 |
Q |
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| T |
52055905 |
tgacttataacttgtgtggtcatcatggaaataaaggcaagctaaaacaacgtctttaatttggactgtccaattgtgcaacagtgcaaagctttagtaa |
52056004 |
T |
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| Q |
529 |
atatgat---acggttttgattttgattatgaaggtggtggtgcggtgagaataagtgggacagac |
591 |
Q |
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| T |
52056005 |
atatgataagagggttttgattttgattatgaaggtggtggtgcggtgagaataagtgggacagac |
52056070 |
T |
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