View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_34 (Length: 557)
Name: NF9005_low_34
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 540
Target Start/End: Complemental strand, 40055659 - 40055125
Alignment:
| Q |
13 |
tttggtgtttagtcaattcattaccaaatatttgtactttttgaacccctcattagaccacatggcaattgtgtcgtatcagaaataattaaggttttat |
112 |
Q |
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| T |
40055659 |
tttggtgtttagtcaattcattaccaaatatttgtactttttgaacccctcgttagaccacatggcaattgtgtcgtatcagaaataattaaggttttat |
40055560 |
T |
|
| Q |
113 |
gatgacgtatacattttctcttaaaaa-cttaatatcttgaaataaatcttatattaatcctatatttggtatacaattgcggtgatccatcttaatttt |
211 |
Q |
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||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40055559 |
gatgacgtatacattttctcttaaaaaactcaatatcctgaagtaaatcttatattaaacctatatttggtatacaattgtggtgatccatcttaatttt |
40055460 |
T |
|
| Q |
212 |
ataaaaactacattttatgacttcttcaaaattatgatggataactgtcaatgtgacatatcgatttagatgatgatatcaaacacacgctaaaactctt |
311 |
Q |
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| T |
40055459 |
ataaaaactacattttatgacttcttcaaaattatgatggataactgtcaatgtgacatatcgatttagatcatgatatcaaacacacgctaaaactctt |
40055360 |
T |
|
| Q |
312 |
ttcaaaaaggaaattaa--cttcattttttggggccagaatactcttttccctctaataataactcaaacta----nnnnnnnnncttttgacgaaaata |
405 |
Q |
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| T |
40055359 |
ttcaaaaaggaaattaactcttcattttttggaaccagaatactcttttccctctaataataactcaaactatttttttttttttcttttgacgaaaata |
40055260 |
T |
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| Q |
406 |
actgaaactgtttgaagagctactgtagtggtatgttgtacatctacttaattattctcacatcacatggatgaataccgacatgatgtcagatctaatt |
505 |
Q |
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| T |
40055259 |
actgaaactgtttgaagagctactgtagtggtatgttgtacatctactcaattattctcacatcacatggatgaataccgacatgacgtcagatctaatt |
40055160 |
T |
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| Q |
506 |
aaaagctttgttcagttgattgtttggttggttat |
540 |
Q |
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| T |
40055159 |
aaaagctttgttcagttgattgtttggttggttat |
40055125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 28307907 - 28307858
Alignment:
| Q |
194 |
gtgatccatcttaattttataaaaactacattttatgacttcttcaaaat |
243 |
Q |
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|||||||||| | ||||| ||||||||||||||||| |||||| |||||| |
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| T |
28307907 |
gtgatccatcgtgattttttaaaaactacattttataacttctacaaaat |
28307858 |
T |
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