View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_37 (Length: 552)

Name: NF9005_low_37
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_37
NF9005_low_37
[»] chr8 (6 HSPs)
chr8 (111-432)||(16343354-16343672)
chr8 (453-541)||(16343664-16343752)
chr8 (19-77)||(16343240-16343298)
chr8 (402-448)||(10538281-10538327)
chr8 (394-435)||(30880719-30880760)
chr8 (399-511)||(6162457-6162569)
[»] chr5 (1 HSPs)
chr5 (305-487)||(12042522-12042703)
[»] chr3 (2 HSPs)
chr3 (334-380)||(49286080-49286126)
chr3 (423-505)||(9754414-9754496)
[»] chr6 (3 HSPs)
chr6 (202-238)||(11210618-11210654)
chr6 (302-370)||(21985555-21985622)
chr6 (302-370)||(33348896-33348963)
[»] scaffold0196 (1 HSPs)
scaffold0196 (345-380)||(30770-30805)
[»] chr2 (1 HSPs)
chr2 (407-438)||(31437712-31437743)
[»] chr7 (1 HSPs)
chr7 (332-370)||(8558379-8558417)
[»] scaffold0023 (1 HSPs)
scaffold0023 (399-436)||(138709-138746)
[»] chr4 (1 HSPs)
chr4 (394-435)||(18621191-18621232)
[»] chr1 (2 HSPs)
chr1 (302-370)||(19103447-19103514)
chr1 (302-370)||(21468414-21468481)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 111 - 432
Target Start/End: Original strand, 16343354 - 16343672
Alignment:
Q  111 agcaaaaaggtttatcattgggggacactgaccaaaatatatataaaaagataaaatattacaaagannnnnnnncaaacctgacccacaaaacattagc 210  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||        ||||||| |||| ||||||||||||    
T  16343354 agcaaaaaggtttgtctttgggggacagtgaccaaaatatatataataagataaaatattacaaagagggggggccaaacctaaccctcaaaacattagc 16343453  T
Q  211 aaaatctgaaattaggaagacataacctcttactagtcaagtctgccaaaatttctacaggagcatagtcccaccaagcaaaattgatcacacggttaaa 310  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||    
T  16343454 aaaatctgaaattaggaagacctaacctattactagtcaagtctgccaaaatttctacagaagcatagtcccaccaagcaaaattgatcacc--gttaaa 16343551  T
Q  311 cctaggctggctagcttatcttgcacagtgatttccttctctaaagatgtgagtgatcatgaagtgcatactactaatcataagcaagcagttctcccat 410  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16343552 cctaggttggctagcttatct-gcacagtgttttccttctctaaagatgtgagtgatcatgaagtgcatactactaatcataagcaagcagttctcccat 16343650  T
Q  411 ctgttccttaattgccaaggaa 432  Q
    ||||||||||||||||||||||    
T  16343651 ctgttccttaattgccaaggaa 16343672  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 453 - 541
Target Start/End: Original strand, 16343664 - 16343752
Alignment:
Q  453 gccaaggaagccagcatagagtcagttgcaatccacaagttattccagtttctttgatgagcacacttaatagccaaaataacaccaaa 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16343664 gccaaggaagccagcatagagtcagttgcaatccacaagttattccagtttctttgatgagcacactcaatagccaaaataacaccaaa 16343752  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 16343240 - 16343298
Alignment:
Q  19 aagttcatctttagagatcaggttctaagaaaagagctgatacatcaaattttctctat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16343240 aagttcatctttagagatcaggttctaagaaaagagctgatacatgaaattttctctat 16343298  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 10538327 - 10538281
Alignment:
Q  402 ttctcccatctgttccttaattgccaaggaacaatgtgtgatgactt 448  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||    
T  10538327 ttctcccatccgttctttaattgccaaggaacaatgtgtgataactt 10538281  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 30880719 - 30880760
Alignment:
Q  394 gcaagcagttctcccatctgttccttaattgccaaggaacaa 435  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  30880719 gcaagcagttctcccatatgtttcttaattgccaaggaacaa 30880760  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 6162457 - 6162569
Alignment:
Q  399 cagttctcccatctgttccttaattgccaaggaacaatgtgtgatgacttgaaagccaaggaagccagcatagagtcagttgcaatccacaagttattcc 498  Q
    ||||| ||||| |||||||| |  |||||||||||||| | ||  || ||||| |||||  || | ||||||||||||||| ||| ||| ||||||| ||    
T  6162457 cagttgtcccacctgttcctcagatgccaaggaacaatctttgcagatttgaaggccaaaaaaactagcatagagtcagtttcaagccaaaagttatgcc 6162556  T
Q  499 agtttctttgatg 511  Q
    ||||| |||||||    
T  6162557 agtttttttgatg 6162569  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 12042522 - 12042703
Alignment:
Q  305 gttaaacctaggctggctagcttatcttgcacagtgatttccttctctaaagatgtgagtgatcatgaagtgcatactactaatcataagcaagcagttc 404  Q
    |||||||||||  | |||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| || |||||| |||| |||||||||||||| ||     
T  12042522 gttaaacctagattagctagcttatct-gcacaataattaccttctctaaagatatgagtaatcatcaaatgcatattactgatcataagcaagcaattt 12042620  T
Q  405 tcccatctgttccttaattgccaaggaacaatgtgtgatgacttgaaagccaaggaagccagcatagagtcagttgcaatcca 487  Q
    || ||||| ||| | ||||||||||| ||| | || | |||||| || ||||||||||| ||||| ||||||||  |||||||    
T  12042621 tctcatctattcttcaattgccaagggacagtatggggtgacttaaatgccaaggaagctagcattgagtcagtgtcaatcca 12042703  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 49286080 - 49286126
Alignment:
Q  334 cacagtgatttccttctctaaagatgtgagtgatcatgaagtgcata 380  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||    
T  49286080 cacaatgattaccttctctaaagatgtgagtaatcatgaagtgcata 49286126  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 9754496 - 9754414
Alignment:
Q  423 tgccaaggaacaatgtgtgatgacttgaaagccaaggaagccagcatagagtcagttgcaatccacaagttattccagtttct 505  Q
    ||||| ||||| || || |||||||||| |||||||| ||| |   ||||||||||  |||||||||| ||||||||||||||    
T  9754496 tgccagggaactatatgagatgacttgatagccaaggtagctaatctagagtcagtctcaatccacaaattattccagtttct 9754414  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 11210618 - 11210654
Alignment:
Q  202 aacattagcaaaatctgaaattaggaagacataacct 238  Q
    |||||||||||||||||||||||||||||| ||||||    
T  11210618 aacattagcaaaatctgaaattaggaagacctaacct 11210654  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 21985622 - 21985555
Alignment:
Q  302 acggttaaacctaggctggctagcttatcttgcacagtgatttccttctctaaagatgtgagtgatcat 370  Q
    |||||||| |||| |||||||||||||||  ||||| ||||||||||| ||| | ||||| ||||||||    
T  21985622 acggttaaccctatgctggctagcttatc-agcacaatgatttccttcgctatacatgtgtgtgatcat 21985555  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 33348896 - 33348963
Alignment:
Q  302 acggttaaacctaggctggctagcttatcttgcacagtgatttccttctctaaagatgtgagtgatcat 370  Q
    |||||||| |||| |||||||||||||||  ||||| ||||||||||| ||| | ||||| ||||||||    
T  33348896 acggttaaccctatgctggctagcttatc-agcacaatgatttccttcgctatacatgtgtgtgatcat 33348963  T

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Target: scaffold0196 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 30805 - 30770
Alignment:
Q  345 ccttctctaaagatgtgagtgatcatgaagtgcata 380  Q
    |||||||||||||||||||| |||||||||||||||    
T  30805 ccttctctaaagatgtgagtaatcatgaagtgcata 30770  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 438
Target Start/End: Original strand, 31437712 - 31437743
Alignment:
Q  407 ccatctgttccttaattgccaaggaacaatgt 438  Q
    ||||||||||||||||||||||||||||||||    
T  31437712 ccatctgttccttaattgccaaggaacaatgt 31437743  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 8558379 - 8558417
Alignment:
Q  332 tgcacagtgatttccttctctaaagatgtgagtgatcat 370  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  8558379 tgcacagtgatttccttccctatagatgtgagtgatcat 8558417  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 138709 - 138746
Alignment:
Q  399 cagttctcccatctgttccttaattgccaaggaacaat 436  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  138709 cagttttcccatctgtttcttaattgccaaggaacaat 138746  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 18621232 - 18621191
Alignment:
Q  394 gcaagcagttctcccatctgttccttaattgccaaggaacaa 435  Q
    |||||||||| ||||||||||| || ||||||||||||||||    
T  18621232 gcaagcagttttcccatctgtttctcaattgccaaggaacaa 18621191  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 19103447 - 19103514
Alignment:
Q  302 acggttaaacctaggctggctagcttatcttgcacagtgatttccttctctaaagatgtgagtgatcat 370  Q
    |||||||| |||| |||||||||||||||  ||||| ||||||||||| ||| | ||||| ||||||||    
T  19103447 acggttaaccctatgctggctagcttatc-agcacaatgatttccttcgctatacatgtgtgtgatcat 19103514  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 21468414 - 21468481
Alignment:
Q  302 acggttaaacctaggctggctagcttatcttgcacagtgatttccttctctaaagatgtgagtgatcat 370  Q
    |||||||| |||| |||||||||||||||  ||||| ||||||||||| ||| | ||||| ||||||||    
T  21468414 acggttaaccctatgctggctagcttatc-agcacaatgatttccttcgctatacatgtgtgtgatcat 21468481  T

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