View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9005_low_39 (Length: 544)
Name: NF9005_low_39
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_39 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 530
Target Start/End: Original strand, 15035958 - 15036482
Alignment:
| Q |
7 |
atggaggtcggaagggaacgcgagagaggttgagaagatgaaagcagtagtgtgatgtcagaagaagcaaaatcatgtttttggctataannnnnnnnng |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
15035958 |
atggaggtcggaagggaacgcgagagaggttgagaagatgaaagcagtagtgtgatgtcggaagaaacaaaatcatgtttttggctataatttttttttg |
15036057 |
T |
|
| Q |
107 |
tggtccgtcacttttgaagttctaactcggttgagctgtttgcactcccgcaatgatgggcctgactttaatacatatataagtataagttgggagggat |
206 |
Q |
| |
|
||||||||||||||||| | | || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036058 |
aggtccgtcacttttgaaatcccaattcggttgagctgtttgcactcccgcaaggatgggcctgactttaatacatatataagtataagttgggagggat |
15036157 |
T |
|
| Q |
207 |
tgtaacccactcttgcatcttttaacaaaagggagtgtaatttactnnnnnnnngg-tataattttctttgtcttcatttgaacagacctttctaacttg |
305 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036158 |
tgtaactcactcttgcatcttttaacaaaagggagtgtaatttactaaaaaaaagggtataattttctttgtcttcatttgaacagacctttctaacttg |
15036257 |
T |
|
| Q |
306 |
aagccacttcgctatccaaatctttatgataaaaatgctcactttgaagtgccaccatagcattactaatcttcatattcttcatgaagaagaacacaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036258 |
aagccacttcgctatccaaatctttatgataaaaatgctcactttgaagtgccaccatagcattactaatcttcatattcttcatgaagaagaacacaat |
15036357 |
T |
|
| Q |
406 |
atgttgaatgctatatgagaataatatctcatcacaatacatcaccagattctatattgtgtgagtatatatatgggttaattccaagttgtttttgtgg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036358 |
atgttgaatgctatatgagaataatatctcatcacaatacatcaccagattctatattgtgtgagtatatatatgggttaattccaagttgtttttgtgg |
15036457 |
T |
|
| Q |
506 |
tagtgggtgatgtgtagtccatctt |
530 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15036458 |
tagtgggtgatgtgtagtccatctt |
15036482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 14992241 - 14992354
Alignment:
| Q |
313 |
ttcgctatccaaatctttatgataaaaatgctcactttgaagtgccaccatagcattactaatcttcatattcttcatgaagaagaacacaatatgttga |
412 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| || ||| ||||||||||| ||| || |||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14992241 |
ttcgttatgcaaatctttatgataaaaatgctgacgttggagtgccaccattgcaataataatgttcatattcatcatgaagaagaacacaatatgttga |
14992340 |
T |
|
| Q |
413 |
atgctatatgagaa |
426 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
14992341 |
atgttatatgagaa |
14992354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 529
Target Start/End: Complemental strand, 36842808 - 36842746
Alignment:
| Q |
467 |
tgagtatatatatgggttaattccaagttgtttttgtggtagtgggtgatgtgtagtccatct |
529 |
Q |
| |
|
|||||||| ||||||||| | |||||||| |||||||||| || |||||||||||||| |||| |
|
|
| T |
36842808 |
tgagtataaatatgggttcactccaagttatttttgtggtggtaggtgatgtgtagtcaatct |
36842746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 4207531 - 4207572
Alignment:
| Q |
9 |
ggaggtcggaagggaacgcgagagaggttgagaagatgaaag |
50 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4207531 |
ggaggtcgggagggaacgcgagagaggttgagaagaagaaag |
4207572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 7810686 - 7810637
Alignment:
| Q |
7 |
atggaggtcggaagggaacgcgagagaggttgagaagatgaaagcagtag |
56 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
7810686 |
atggaggttgggagggaacgcaagagaggttgagaagaagaaagaagtag |
7810637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University