View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_4 (Length: 783)

Name: NF9005_low_4
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_4
NF9005_low_4
[»] chr5 (1 HSPs)
chr5 (12-765)||(40080999-40081754)


Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 12 - 765
Target Start/End: Complemental strand, 40081754 - 40080999
Alignment:
Q  12 agagatcgagttatatggtgtcacgtgcaatgtcaaaattttgtgttcaagtaacataacttttgttcaaaattgtggctgtgtcacattgtgaaccttt 111  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40081754 agagatcgagttatatggcgtcacgtgcaatgtctaaattttgtgttcaagtaacataacttttgttcaaaattgtggttgtgtcacattgtgaaccttt 40081655  T
Q  112 atattacagtaaatgtaagcaaatgtgatcaatgtggtcaaaatatgtgattgcaaagccatcaaagatgcctctaaatgcatctttggaaataaagtaa 211  Q
    ||||||     ||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40081654 atatta-----aatgtaagcaaatgtg---------gtcaaaatatgtgattgcaaagccatcaaagatacctctaaatgcatctttggaaataaagtaa 40081569  T
Q  212 gttcgacaaaataacaacgacgctatgataaa-------------aatgaggtttgaaacccatgcggcgctatgattttgttactaaagtgtaactttt 298  Q
    |||||||||||||||||||||||||||||| |             |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40081568 gttcgacaaaataacaacgacgctatgatatattttttttattacaatgaggtttgaaacccatgcggcgctatgattttgttactaaagtgtaactttt 40081469  T
Q  299 tcaatattactatggttcgtcgtgaattttgtcaaactcaaacatgcactaaaccatgatattatggccacaattgggtagttgctattcgaccccttct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40081468 tcaatattactatggttcgtcgtgaattttgtcaaactcaaacatgcactaaaccatgatattatggccacaattgggtagttgctattcgaccccttct 40081369  T
Q  399 aatttctaagagaggatcttctctatttcctccattgttgtagtttaggaattataaatgtgataggtgatgttcaaggagaaatagggagnnnnnnntg 498  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  40081368 aatttctaagagaggatcttctctattttctccattgttgtagtttaggaattataaatgtgataggtgatgttcaaggagaaatagggagtaaaaaatg 40081269  T
Q  499 gagggtgtttcttgctcttcttttttgtttgaaaatagag---nnnnnnnnncattagactctcatgattcaaactcttgtattgcatcaataaatgcca 595  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40081268 gagggtgtttcttgctcttcttttttgtttgaaaatagagtgttttttttttcattagactctcatgattcaaactcttgtattgcatcaataaatgcca 40081169  T
Q  596 atcataataatttattcttcatgtcagaagcatacctcactctcaaacaattgcatttatgattcatcctaattttctatggaaaataaataaatcagta 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40081168 atcataataatttattcttcatgtcagaagcatacctcactctcaaacaattgcatttatgattcatcctaattttctatggaaaataaataaatcagta 40081069  T
Q  696 ataaagggatctcttactcttggagggtccagttggtagtttcttgttgcattcttttggaagatactta 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40081068 ataaagggatctcttactcttggagggtccagttggtagtttcttgttgcattcttttggaagctactta 40080999  T

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