View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_40 (Length: 543)
Name: NF9005_low_40
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 527
Target Start/End: Complemental strand, 50555058 - 50554514
Alignment:
| Q |
9 |
tggtgttgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgaccatatcctcagctaacttcacctat |
108 |
Q |
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| T |
50555058 |
tggtggtgtgctcatttgacattgattatgaagaaattgattatttagtgatgtggtgaaagagcttctagtgaccatatcctcagctaacttcacctat |
50554959 |
T |
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| Q |
109 |
tataatagtatatgttagttaatttcttcaatcattgatatttattttcgtatgcataatta-------agctcactgtataccttagctctcaaagctt |
201 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
50554958 |
tataatagtatatgttagttaatttcttcaatcagtgatatttattttcgtatgaataattatataataagctcactgtataccttagctctcaaagctt |
50554859 |
T |
|
| Q |
202 |
ctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagtttcag |
301 |
Q |
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| T |
50554858 |
caacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatcagtaaactgtttatatagtgttgcattttccagtttcag |
50554759 |
T |
|
| Q |
302 |
tttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg-------------------ctcacaaaagattatgctccaaaaca |
382 |
Q |
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| T |
50554758 |
tttttcaacctgagagatcaaaattcaaatgggaagaaaatgatgactacttatgctgtttagctgttatacatctcacaaaagattatgctccaaaaca |
50554659 |
T |
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| Q |
383 |
ttgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgt |
482 |
Q |
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| T |
50554658 |
ttgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgt |
50554559 |
T |
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| Q |
483 |
catgaatcattattatatcataatttgaaaaccacatataataag |
527 |
Q |
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| T |
50554558 |
catgaatcattattatatcataatttgaaaaccaaatataataag |
50554514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 169 - 356
Target Start/End: Complemental strand, 50817513 - 50817326
Alignment:
| Q |
169 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
268 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
50817513 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50817414 |
T |
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| Q |
269 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
356 |
Q |
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| T |
50817413 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50817326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 169 - 356
Target Start/End: Original strand, 50858351 - 50858538
Alignment:
| Q |
169 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
268 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
50858351 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50858450 |
T |
|
| Q |
269 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
356 |
Q |
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| T |
50858451 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50858538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 50817093 - 50816972
Alignment:
| Q |
374 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
473 |
Q |
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||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
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| T |
50817093 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50816994 |
T |
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| Q |
474 |
aaaccatgtcatgaatcattat |
495 |
Q |
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| T |
50816993 |
aaaccatgtcatgaatcattat |
50816972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 50858771 - 50858892
Alignment:
| Q |
374 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
473 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
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| T |
50858771 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50858870 |
T |
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| Q |
474 |
aaaccatgtcatgaatcattat |
495 |
Q |
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|||||||||||||||||||||| |
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| T |
50858871 |
aaaccatgtcatgaatcattat |
50858892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 50817620 - 50817528
Alignment:
| Q |
15 |
tgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgaccatatcctcagctaacttcaccta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |||| || ||||||||||||| |
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| T |
50817620 |
tgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttctagtgactatatgcttgactaacttcaccta |
50817528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 50858244 - 50858336
Alignment:
| Q |
15 |
tgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgaccatatcctcagctaacttcaccta |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |||| || ||||||||||||| |
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| T |
50858244 |
tgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttctagtgactatatgcttgactaacttcaccta |
50858336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 312
Target Start/End: Original strand, 1130524 - 1130656
Alignment:
| Q |
180 |
tataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatata |
279 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||| |||||||| || || | ||| || |||||||||| |||| ||| |||| ||| ||| ||| |
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| T |
1130524 |
tataccttagctctcaaagcttcaacatcggattttagtactcggttgttagtgttagcatcgcgaaattgttggctggcatctgtaagctgcttaaata |
1130623 |
T |
|
| Q |
280 |
gtgttgcattttccagtttcagtttttcaacct |
312 |
Q |
| |
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| ||||||||||||| ||| || |||||||| |
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| T |
1130624 |
ggcttgcattttccagcctcaattgttcaacct |
1130656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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