View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_42 (Length: 536)
Name: NF9005_low_42
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 182 - 513
Target Start/End: Original strand, 41341130 - 41341461
Alignment:
| Q |
182 |
tcatataactggaacggaatggcctgcttcacaagacattacattaactataagctacacatactaacatcatattaaataatttagactgtaaacaaag |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| |
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| T |
41341130 |
tcatataactggaacggaatggcctgcttcacaagacattacattaactataagctacacctaataacatcatattaaataatttagacggtaaacaaag |
41341229 |
T |
|
| Q |
282 |
atactaagaccagccacaaataaatgcaacattgagttaaacaattagcttaccccaaatgagggtctgtaatcagcaggagcacctcccttgtctcctc |
381 |
Q |
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| T |
41341230 |
atactaagaccagccacaaataaatgcaacattgagttaaacaattagcttaccccaaatgagggtctgtaatcagcaggagcacctcccttgtctcctc |
41341329 |
T |
|
| Q |
382 |
caaattcaccacgaggacctccacggtacccatcacggtcaccaccaaatcttctctccccttcaaatctgggtggacccctatacacaaatcaaccagt |
481 |
Q |
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| T |
41341330 |
caaattcaccacgaggacctccacggtacccatcacggtcaccaccaaatcttctctccccttcaaatctgggtggacccctatacacaaatcaaccagt |
41341429 |
T |
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| Q |
482 |
taacaaccattcacataatcatcaaaaaccct |
513 |
Q |
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| T |
41341430 |
taacaaccatccacataatcatcaaaaaccct |
41341461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 41341058 - 41341122
Alignment:
| Q |
11 |
aagcagagataccgacatcggacaagacacatacattgacactacgcaccgacaccaggatacaa |
75 |
Q |
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| T |
41341058 |
aagcacagatacggacatcggacaagacacaaacattgacactacccaccgacaccaggacacaa |
41341122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 463
Target Start/End: Complemental strand, 2602511 - 2602370
Alignment:
| Q |
331 |
ttaccccaaatgagggtctgtaatcagcaggagcacctcccttgtctcctccaaattcacca---------cgaggacctccacggtacccatcacggtc |
421 |
Q |
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|||||||||| || || ||||| ||||| ||||| || || ||||||||||||||||||||| | ||| ||||||||||| ||||||||||| |
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| T |
2602511 |
ttaccccaaaagaaggcctgtagtcagctggagctccacctttgtctcctccaaattcaccagcaggtcctctagggcctccacggtatccatcacggtc |
2602412 |
T |
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| Q |
422 |
accaccaaatcttctctccccttcaaatctgggtggacccct |
463 |
Q |
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| T |
2602411 |
accaccaaatctcctttctccatcaaatcttggtgggcccct |
2602370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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