View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_44 (Length: 533)

Name: NF9005_low_44
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_44
NF9005_low_44
[»] chr2 (5 HSPs)
chr2 (19-523)||(6788512-6789016)
chr2 (437-507)||(20167634-20167704)
chr2 (434-478)||(11563320-11563364)
chr2 (451-523)||(7165772-7165844)
chr2 (466-523)||(18903195-18903252)
[»] chr5 (3 HSPs)
chr5 (443-519)||(27769982-27770058)
chr5 (444-507)||(22391694-22391757)
chr5 (474-523)||(9607133-9607182)
[»] chr1 (13 HSPs)
chr1 (444-506)||(6450323-6450385)
chr1 (445-523)||(16192270-16192348)
chr1 (443-507)||(6541006-6541070)
chr1 (436-520)||(6728025-6728109)
chr1 (464-523)||(30050321-30050380)
chr1 (458-507)||(19464230-19464279)
chr1 (462-518)||(31614995-31615051)
chr1 (445-519)||(44391534-44391608)
chr1 (438-519)||(26515370-26515451)
chr1 (447-520)||(38445198-38445271)
chr1 (462-519)||(47921825-47921882)
chr1 (443-487)||(3728039-3728083)
chr1 (443-507)||(9777147-9777211)
[»] chr7 (5 HSPs)
chr7 (443-523)||(5358207-5358287)
chr7 (436-516)||(18942730-18942810)
chr7 (458-523)||(32996252-32996317)
chr7 (477-520)||(5362465-5362508)
chr7 (442-522)||(34703628-34703707)
[»] chr3 (3 HSPs)
chr3 (443-516)||(7672337-7672410)
chr3 (443-523)||(40619216-40619296)
chr3 (443-518)||(26483037-26483112)
[»] scaffold0041 (1 HSPs)
scaffold0041 (441-519)||(37309-37387)
[»] chr4 (6 HSPs)
chr4 (444-506)||(36218493-36218555)
chr4 (466-519)||(10462828-10462881)
chr4 (444-485)||(23630549-23630590)
chr4 (462-523)||(24806490-24806551)
chr4 (443-520)||(52701020-52701097)
chr4 (444-500)||(29006559-29006614)
[»] chr6 (2 HSPs)
chr6 (442-507)||(13382475-13382540)
chr6 (441-519)||(6524842-6524920)
[»] chr8 (4 HSPs)
chr8 (438-501)||(18080177-18080240)
chr8 (468-523)||(21601932-21601987)
chr8 (442-519)||(34281333-34281410)
chr8 (443-519)||(28802283-28802359)
[»] scaffold0003 (1 HSPs)
scaffold0003 (444-523)||(329062-329142)


Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Complemental strand, 6789016 - 6788512
Alignment:
Q  19 agtgaaaaattaaacgggttaaaagagaaaagagttgaaaatggaaagagatttgaatgaacctggtagggtttgtagtggatgagagaagaatcgaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6789016 agtgaaaaattaaacgggttaaaagagaaaagagttgaaaatggaaagagatttgaatgaacctggtagggtttggagtggatgagagaagaatcgaaga 6788917  T
Q  119 aggagaaagaaaacgtgcttgtgagggtggagagttgaagaaacagcttctcaatatcattgtttttgttattagtagtactcttaggttgttttcttcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6788916 aggagaaagaaaacgtgcttgtgagggtggagagttgaagaaacagcttctcaatatcattgtttttgttattagtagtactcttaggttgttttcttcc 6788817  T
Q  219 tatattgccactatcattctgcattttcaatgttgtctcttttgtaattttgttcatctttgggggttttatcgtctgaccttgatccaacggtcctcgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6788816 tatattgccactatcattctgcattttcaatgttgtctcttttgtaattttgttcatctttgggggttttatcgtctgaccttgatccaacggtcctcgt 6788717  T
Q  319 ttcttttgctatttttggctttattgtaatttcctcgatctttaggggtgttatcgtctgaccttaatcgaacggtccatattcttctactcttttttgt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6788716 ttcttttgctatttttggctttattgtaatttcctcgatctttaggggtgttatcgcctgaccttaatcgaacggtccatattcttctactcttttttgt 6788617  T
Q  419 ctttgttgtaacttctttaagaggtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  6788616 ctttgttgtaacttctttaagaggtaatagtcattttcatccttaaatgtgtaacaaatagtcataatagtcattcaatgtatcaaaattttaaaatagt 6788517  T
Q  519 ctctg 523  Q
     ||||    
T  6788516 ttctg 6788512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 507
Target Start/End: Complemental strand, 20167704 - 20167634
Alignment:
Q  437 aagaggtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaat 507  Q
    |||||||||||||||||||  || ||||||||||||||| |||||| |||| ||| |||||| ||||||||    
T  20167704 aagaggtaatagtcattttggtctttaaatgtgtaacaagtagtcacaatagtcactcaatgcatcaaaat 20167634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 478
Target Start/End: Original strand, 11563320 - 11563364
Alignment:
Q  434 tttaagaggtaatagtcattttcatccttaaatgtgtaacaaata 478  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||    
T  11563320 tttaagaggtaatagtcactttgatccttaaatgtgtaacaaata 11563364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 7165844 - 7165772
Alignment:
Q  451 attttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    ||||| |||| |||||||||||| | |||||| |||| || |||||||||| |||||  ||||||||||||||    
T  7165844 attttgatccctaaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagtctctg 7165772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 523
Target Start/End: Complemental strand, 18903252 - 18903195
Alignment:
Q  466 tgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    |||||||| | |||||| |||| |||||||||||||| |||| |||||||||| ||||    
T  18903252 tgtgtaacgagtagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctg 18903195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 443 - 519
Target Start/End: Complemental strand, 27770058 - 27769982
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    |||||||| |||| |||| ||||||||||| |||||||||||||| || |||||||||| ||||| |||||||||||    
T  27770058 taatagtccttttgatccctaaatgtgtaataaatagtcataatagtctttcaatgtattaaaattctaaaatagtc 27769982  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 507
Target Start/End: Original strand, 22391694 - 22391757
Alignment:
Q  444 aatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaat 507  Q
    |||| |||| || ||||||||||||||||| ||||||||||||| || |||||| |||||||||    
T  22391694 aataatcatattgatccttaaatgtgtaacgaatagtcataatagtctttcaatatatcaaaat 22391757  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 9607133 - 9607182
Alignment:
Q  474 aaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    ||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  9607133 aaatactcataataatccatcaatgtatcaaaattttaaaatagtctctg 9607182  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 6450385 - 6450323
Alignment:
Q  444 aatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaa 506  Q
    |||||||||||||||| || |||||||||| ||||||||||| |||| |||||||||||||||    
T  6450385 aatagtcattttcatcattcaatgtgtaacgaatagtcataacaatccttcaatgtatcaaaa 6450323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 523
Target Start/End: Complemental strand, 16192348 - 16192270
Alignment:
Q  445 atagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    |||||||||||  | ||| |||||||||||| ||||||||||| || ||||||||||||||||  ||||||||| ||||    
T  16192348 atagtcattttagtacttgaatgtgtaacaagtagtcataatattccttcaatgtatcaaaattttaaaatagtttctg 16192270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 507
Target Start/End: Original strand, 6541006 - 6541070
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaat 507  Q
    ||||||||||||| |||| | |||||||||| ||||||||||||| || || |||||||||||||    
T  6541006 taatagtcattttaatccctgaatgtgtaacgaatagtcataatagtcctttaatgtatcaaaat 6541070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 520
Target Start/End: Complemental strand, 6728109 - 6728025
Alignment:
Q  436 taagaggtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtct 520  Q
    |||| ||| |||||||||||| ||| | |||||||||| |||||||| |||| || ||||||| |||||||| | ||||||||||    
T  6728109 taaggggtgatagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagtct 6728025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 464 - 523
Target Start/End: Original strand, 30050321 - 30050380
Alignment:
Q  464 aatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    ||||||||||||||||||| ||||||  |||||||||||| |||  ||||||||||||||    
T  30050321 aatgtgtaacaaatagtcacaataattcttcaatgtatcataattttaaaatagtctctg 30050380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 19464230 - 19464279
Alignment:
Q  458 tccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaat 507  Q
    |||||||||||||||||| |||||| |||| || ||||||||||||||||    
T  19464230 tccttaaatgtgtaacaagtagtcacaatagtccttcaatgtatcaaaat 19464279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 31614995 - 31615051
Alignment:
Q  462 taaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagt 518  Q
    |||||||||||||||||  ||||||| ||| |||||||||| |||||| ||||||||    
T  31614995 taaatgtgtaacaaataaccataatagtcactcaatgtatcgaaatgccaaaatagt 31615051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 519
Target Start/End: Original strand, 44391534 - 44391608
Alignment:
Q  445 atagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    |||| ||||||  ||| |||||||||| | | |||||| |||| ||||||||| ||||||||| |||||||||||    
T  44391534 atagacattttgttccctaaatgtgtagcgagtagtcagaatagtcattcaatatatcaaaattctaaaatagtc 44391608  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 519
Target Start/End: Complemental strand, 26515451 - 26515370
Alignment:
Q  438 agaggtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    |||||||||| |||||||  ||| |||||||||||  | | || ||||||||  || ||||||||||||| |||||||||||    
T  26515451 agaggtaataatcattttggtccctaaatgtgtaaagattggtaataataattcttgaatgtatcaaaattctaaaatagtc 26515370  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 520
Target Start/End: Complemental strand, 38445271 - 38445198
Alignment:
Q  447 agtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtct 520  Q
    ||||||||| || | | |||||| |||||||||||| |||| || || |||||||| |||| ||||||||||||    
T  38445271 agtcattttgattcctgaatgtgcaacaaatagtcacaatagtcctttaatgtatcgaaattctaaaatagtct 38445198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 519
Target Start/End: Original strand, 47921825 - 47921882
Alignment:
Q  462 taaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    ||||||||||| |||||||||||||| ||  | | ||||||||||| |||||||||||    
T  47921825 taaatgtgtaataaatagtcataatagtctcttagtgtatcaaaattctaaaatagtc 47921882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 487
Target Start/End: Original strand, 3728039 - 3728083
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataata 487  Q
    ||||||||||||| |||| | |||||||||||||||| |||||||    
T  3728039 taatagtcattttgatccattaatgtgtaacaaatagccataata 3728083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 507
Target Start/End: Complemental strand, 9777211 - 9777147
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaat 507  Q
    ||||||||||||| |||||| ||||| | |||| ||||||||||| |  |||||| |||||||||    
T  9777211 taatagtcattttgatccttgaatgtattacaagtagtcataatagtttttcaatatatcaaaat 9777147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 523
Target Start/End: Original strand, 5358207 - 5358287
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    ||||||||| |||||||| |||||||||||  |||||| | |||| || ||||||||||||||||  ||||||||||||||    
T  5358207 taatagtcactttcatccctaaatgtgtaatgaatagttacaatagtccttcaatgtatcaaaattttaaaatagtctctg 5358287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 516
Target Start/End: Original strand, 18942730 - 18942810
Alignment:
Q  436 taagaggtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaata 516  Q
    |||| |||||||||||||||  ||| | |||||||||  ||||||||||||| ||| |||||||||||||||  |||||||    
T  18942730 taaggggtaatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaattttaaaata 18942810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 523
Target Start/End: Original strand, 32996252 - 32996317
Alignment:
Q  458 tccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    ||||||||||||||| ||||||| ||||| ||| ||||||||||| ||||   |||||||||||||    
T  32996252 tccttaaatgtgtaataaatagttataatgatccttcaatgtatcgaaatttaaaaatagtctctg 32996317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 520
Target Start/End: Complemental strand, 5362508 - 5362465
Alignment:
Q  477 tagtcataataatcattcaatgtatcaaaatgctaaaatagtct 520  Q
    |||||| ||||||||||||||||||||||||  |||||||||||    
T  5362508 tagtcacaataatcattcaatgtatcaaaattttaaaatagtct 5362465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 34703628 - 34703707
Alignment:
Q  442 gtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctct 522  Q
    |||||||||||||| |||| ||||||| |||| | |||||| |||| ||  |||||||||| ||||  |||||||||||||    
T  34703628 gtaatagtcattttgatccataaatgtataacgagtagtcacaatagtccatcaatgtatc-aaattttaaaatagtctct 34703707  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 516
Target Start/End: Original strand, 7672337 - 7672410
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaata 516  Q
    |||||||||||||  ||||| ||||||||| ||||||| ||||||||| || ||||||| ||||| ||||||||    
T  7672337 taatagtcattttggtccttgaatgtgtaataaatagttataataatcttttaatgtattaaaattctaaaata 7672410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 523
Target Start/End: Complemental strand, 40619296 - 40619216
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    ||||||| | ||| |||||| |||||||||  | |||||||| |||||  |||||||||||||||  ||||||||||||||    
T  40619296 taatagttactttgatccttgaatgtgtaatgagtagtcatattaatccctcaatgtatcaaaattttaaaatagtctctg 40619216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 26483037 - 26483112
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagt 518  Q
    |||||||||||||  |||||| |||| |||| | ||| || |||| ||||| ||||||||||||| ||||||||||    
T  26483037 taatagtcattttggtccttagatgtataacgagtagacacaatagtcatttaatgtatcaaaattctaaaatagt 26483112  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 519
Target Start/End: Original strand, 37309 - 37387
Alignment:
Q  441 ggtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    ||||||||  |||||| || || || ||||||||||||||| |||||||| |  ||||||||||||| |||||||||||    
T  37309 ggtaatagcgattttcgtctttgaacgtgtaacaaatagtcttaataatcgtgaaatgtatcaaaattctaaaatagtc 37387  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 506
Target Start/End: Original strand, 36218493 - 36218555
Alignment:
Q  444 aatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaa 506  Q
    |||| ||||||| ||| |||||||||||||||||||| |||||| ||  ||||||||||||||    
T  36218493 aataatcattttgatctttaaatgtgtaacaaatagtaataatagtccatcaatgtatcaaaa 36218555  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 10462881 - 10462828
Alignment:
Q  466 tgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    |||||||||| ||||||||||| ||||| |||||||||||||  ||||||||||    
T  10462881 tgtgtaacaagtagtcataatagtcatttaatgtatcaaaattgtaaaatagtc 10462828  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 485
Target Start/End: Original strand, 23630549 - 23630590
Alignment:
Q  444 aatagtcattttcatccttaaatgtgtaacaaatagtcataa 485  Q
    ||||||| ||||||||| |||||||||||||| |||||||||    
T  23630549 aatagtcgttttcatccctaaatgtgtaacaagtagtcataa 23630590  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 523
Target Start/End: Original strand, 24806490 - 24806551
Alignment:
Q  462 taaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    ||||||| |||||||||||||| ||| || |||||||||| |||||  ||||||||| ||||    
T  24806490 taaatgtataacaaatagtcattatagtccttcaatgtattaaaattttaaaatagtatctg 24806551  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 520
Target Start/End: Complemental strand, 52701097 - 52701020
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtct 520  Q
    |||||||||||||  | ||| ||||||||||||||| ||||||||||  || | |||||| ||||  |||||||||||    
T  52701097 taatagtcattttattacttgaatgtgtaacaaataatcataataattcttaactgtatctaaattttaaaatagtct 52701020  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 29006614 - 29006559
Alignment:
Q  444 aatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgta 500  Q
    |||||||||||| |||||||||||||| || | ||| ||||||| ||||||||||||    
T  29006614 aatagtcatttttatccttaaatgtgt-acgagtagccataatagtcattcaatgta 29006559  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 507
Target Start/End: Complemental strand, 13382540 - 13382475
Alignment:
Q  442 gtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaat 507  Q
    |||||| |||||||  ||||||||||| |||||||||||| ||||| ||  |||||||||||||||    
T  13382540 gtaataatcattttagtccttaaatgtataacaaatagtcgtaatagtctgtcaatgtatcaaaat 13382475  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 519
Target Start/End: Original strand, 6524842 - 6524920
Alignment:
Q  441 ggtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    |||||||| ||||||  ||| | ||||||||| || ||||||||||| ||  ||||||||| ||||| |||||||||||    
T  6524842 ggtaatagccattttggtccatgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtc 6524920  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 501
Target Start/End: Original strand, 18080177 - 18080240
Alignment:
Q  438 agaggtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtat 501  Q
    ||||| ||||||||||||  ||| ||||||||||||||||||||| |||  || ||||||||||    
T  18080177 agaggcaatagtcattttggtccctaaatgtgtaacaaatagtcacaatggtccttcaatgtat 18080240  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 21601932 - 21601987
Alignment:
Q  468 tgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    ||||||||||||||| |||| ||  ||||||||||||||| | |||||||||||||    
T  21601932 tgtaacaaatagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctg 21601987  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 519
Target Start/End: Original strand, 34281333 - 34281410
Alignment:
Q  442 gtaatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    ||||||||||||||  ||  ||||| ||||||||  ||||||||||||  ||||||||| ||||||  ||||||||||    
T  34281333 gtaatagtcattttagtctctaaatttgtaacaagcagtcataataatatttcaatgtaccaaaattttaaaatagtc 34281410  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 519
Target Start/End: Original strand, 28802283 - 28802359
Alignment:
Q  443 taatagtcattttcatccttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtc 519  Q
    |||||||||||||  ||  | ||||||||||||||||||| |||| ||  || ||||||||||||  ||||||||||    
T  28802283 taatagtcattttagtcgctgaatgtgtaacaaatagtcacaatagtccatcgatgtatcaaaattttaaaatagtc 28802359  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 523
Target Start/End: Complemental strand, 329142 - 329062
Alignment:
Q  444 aatagtcattttcatc-cttaaatgtgtaacaaatagtcataataatcattcaatgtatcaaaatgctaaaatagtctctg 523  Q
    |||||||||||| ||| ||| |||||||||| |||| | | |||||||| | |||||||||||||  ||||||||| ||||    
T  329142 aatagtcattttgatctcttgaatgtgtaacgaatatttaaaataatcacttaatgtatcaaaattataaaatagtttctg 329062  T

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