View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_47 (Length: 529)
Name: NF9005_low_47
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 43452984 - 43453493
Alignment:
| Q |
1 |
taatattaggagggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagat |
100 |
Q |
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| T |
43452984 |
taatattaggagggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagat |
43453083 |
T |
|
| Q |
101 |
gaacttgggaaaggaaagtttggaactacttcactttgtttggagaaatcaaccgggaagacatacgcatgcaaagcaataccaaaggtaaaattgttta |
200 |
Q |
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| T |
43453084 |
gaacttgggaaaggaaagtttggaactacttcactttgtttggagaaatcaaccaggaagacatacgcatgcaaagcaataccaaaggtaaaattgttta |
43453183 |
T |
|
| Q |
201 |
gagagaatgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatcc |
300 |
Q |
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| T |
43453184 |
gagagaatgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatcc |
43453283 |
T |
|
| Q |
301 |
ggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactc |
400 |
Q |
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| T |
43453284 |
ggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactc |
43453383 |
T |
|
| Q |
401 |
gcaagaacgattgttaatgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaag |
500 |
Q |
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| T |
43453384 |
gcaagaacgattgttaatgttgttgaggcttgtcactcacgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaag |
43453483 |
T |
|
| Q |
501 |
attccactct |
510 |
Q |
| |
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| T |
43453484 |
attccactct |
43453493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 510
Target Start/End: Original strand, 43462433 - 43462932
Alignment:
| Q |
11 |
agggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaacttggga |
110 |
Q |
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||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||| ||||| ||| ||||||||||||||||||| |
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| T |
43462433 |
agggtaacagcaaaaagtgcaggtcttcgagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggag |
43462532 |
T |
|
| Q |
111 |
aaggaaagtttggaactacttcactttgtttggagaaatcaaccgggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatga |
210 |
Q |
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| T |
43462533 |
aaggggaatttggaactacttcactttgtttggagaaatcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatga |
43462632 |
T |
|
| Q |
211 |
tatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtt |
310 |
Q |
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| T |
43462633 |
tgtagaggatgtgaggagggaaattaagataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtt |
43462732 |
T |
|
| Q |
311 |
tatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacga |
410 |
Q |
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| T |
43462733 |
tatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaacta |
43462832 |
T |
|
| Q |
411 |
ttgttaatgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattccactct |
510 |
Q |
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| T |
43462833 |
tcgttagtgttgttgagacttgtcactcacgtggagttatgcattgtgatcttaagcctgaaaattttctttttgttgatggacatgaagattcaactct |
43462932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 487
Target Start/End: Complemental strand, 24421081 - 24420812
Alignment:
| Q |
218 |
gatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattg |
317 |
Q |
| |
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||||||||||| |||||| | || ||||||||||| | ||| | | | |||||||| || || || | ||||| ||| ||| | || | |||| || ||| |
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| T |
24421081 |
gatgtgaggagagagattcagattatgcatcacttggctggcagttcgaatgtgatttcgattaaggaagcttctgaggatgctgttgctgttcatgttg |
24420982 |
T |
|
| Q |
318 |
taatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaa |
417 |
Q |
| |
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| ||||| || |||| ||| ||||| | ||||| |||||||||||||| | ||||| || || |||||||| || ||||| ||||| || |||||| |
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| T |
24420981 |
ttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaaaggcggcgaaacttgcaaggactattgttgg |
24420882 |
T |
|
| Q |
418 |
tgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgtt |
487 |
Q |
| |
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|||| || || | ||||| || ||| || |||||||| ||||||||||| || ||||| ||||||||| |
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| T |
24420881 |
tgttattcagtcatgtcattctcttggtgtaatgcatcgcgatcttaagccggagaattttctttttgtt |
24420812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 478
Target Start/End: Original strand, 8403596 - 8403628
Alignment:
| Q |
446 |
gttatgcatcgtgatcttaagcctgaaaatttc |
478 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
8403596 |
gttatgcatcgtgatcttaagcctgagaatttc |
8403628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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