View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_48 (Length: 514)

Name: NF9005_low_48
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_48
NF9005_low_48
[»] chr4 (4 HSPs)
chr4 (20-510)||(3345263-3345753)
chr4 (307-373)||(24100758-24100824)
chr4 (394-447)||(27587332-27587385)
chr4 (317-373)||(27587329-27587385)
[»] chr3 (6 HSPs)
chr3 (336-445)||(42896170-42896279)
chr3 (305-421)||(42896177-42896293)
chr3 (320-371)||(19674593-19674644)
chr3 (339-413)||(32711233-32711307)
chr3 (319-373)||(44664193-44664247)
chr3 (341-373)||(2544491-2544523)
[»] chr6 (4 HSPs)
chr6 (336-445)||(24985960-24986069)
chr6 (316-364)||(12240110-12240158)
chr6 (313-371)||(24986017-24986075)
chr6 (340-373)||(24089726-24089759)
[»] chr2 (6 HSPs)
chr2 (306-371)||(37716469-37716534)
chr2 (341-425)||(41332657-41332740)
chr2 (338-371)||(27075023-27075056)
chr2 (341-426)||(30905153-30905238)
chr2 (340-376)||(32457178-32457214)
chr2 (394-430)||(41464740-41464776)
[»] chr7 (4 HSPs)
chr7 (343-377)||(40364659-40364693)
chr7 (341-426)||(27940771-27940856)
chr7 (318-371)||(31903035-31903088)
chr7 (340-373)||(35436305-35436338)
[»] chr1 (1 HSPs)
chr1 (340-373)||(46508223-46508256)
[»] chr5 (1 HSPs)
chr5 (325-373)||(35349496-35349544)


Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 20 - 510
Target Start/End: Complemental strand, 3345753 - 3345263
Alignment:
Q  20 cactcatcaataagacacttataaccatggtatgtatgctaactcactctctttgaaatttatggattgcaattaagagaagtatagctaatattaattg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3345753 cactcatcaataagacacttataaccatggtatgtatgctaactcactctctttgaaatttatggattgcaattaagagaagtatagctaatattaattg 3345654  T
Q  120 atttggtgcatattatcaattaatgttcaactagttctatttactttcatattaacataacgttgttgatattgtcatgcatttttccttgagctttaat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3345653 atttggtgcatattatcaattaatgttcaactagttctatttactttcatattaacataatgttgttgatattgtcatgcatttttccttgagctttaat 3345554  T
Q  220 tctagttgaagtaaacacaaaaatgtgtagcatgtttgtaattttcacattaatttcaaagtctgagcacattctttgtgaatgcaatactctctctgat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  3345553 tctagttgaagtaaacacaaaaatgtgtagcatgtttgtaattttcacattaatttcaaagtctaagcacattctttgtgaatgcaatactctctctggt 3345454  T
Q  320 ccttgttataaaacataattcactttttaggttaattgaataattgatgtatctgatccgtataacaaaccatttacatcaattattcaatgaacttaaa 419  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  3345453 ccttgtaataagacataattcactttttaggttcattgaataattgatgtatctgatccgtattacaaaccatatacatcaattattcaatgaacttaaa 3345354  T
Q  420 aaataaattgtaccttataatgaggatcaaatgaagtaattgattgacttttagacatgcatttcatgttttaagcatagaacacgaaact 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3345353 aaataaattgtaccttataatgaggatcaaatgaagtaattgattgacttttagacatgcatttcatgttttaagcatagaacacggaact 3345263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 24100758 - 24100824
Alignment:
Q  307 tactctctctgatccttgttataaaacataattcactttttaggttaattgaataattgatgtatct 373  Q
    ||||| ||| ||||||| |||||| | |||||| ||||||||| || ||||||||||| ||||||||    
T  24100758 tactccctccgatccttattataagaaataattaactttttagattcattgaataattaatgtatct 24100824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 27587332 - 27587385
Alignment:
Q  394 tacatcaattattcaatgaacttaaaaaataaattgtaccttataatgaggatc 447  Q
    ||||| ||||||||||||||| ||||||||||||| |  |||||||| ||||||    
T  27587332 tacattaattattcaatgaacctaaaaaataaattatttcttataataaggatc 27587385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 27587385 - 27587329
Alignment:
Q  317 gatccttgttataaaacataattcactttttaggttaattgaataattgatgtatct 373  Q
    ||||||| |||||| | |||||| | |||||||||| ||||||||||| ||||||||    
T  27587385 gatccttattataagaaataatttattttttaggttcattgaataattaatgtatct 27587329  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 42896170 - 42896279
Alignment:
Q  336 aattcactttttaggttaattgaataattgatgtatctgatccgtataacaa--accatttacatcaattattcaatgaacttaaaaaataaattgtacc 433  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||  ||||| ||  ||||| ||||||| ||||||||||||| |||||| | ||||||  |    
T  42896170 aattcactttttaggttcattgaataactgatgtatctggtc--tataataaggaccatatacatcagttattcaatgaacgtaaaaagtgaattgtttc 42896267  T
Q  434 ttataatgagga 445  Q
    ||||||| ||||    
T  42896268 ttataataagga 42896279  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 421
Target Start/End: Complemental strand, 42896293 - 42896177
Alignment:
Q  305 aatactctctctgatccttgttataaaacataattcactttttaggttaattgaataattgatgtatctgatccgtataacaaaccatttacatcaatta 404  Q
    |||||||  |||| ||||| |||||| | | ||||||||||||| ||| ||||||||| |||||||| || ||| ||| | | ||||  ||||||| |||    
T  42896293 aatactccttctggtccttattataagaaacaattcactttttacgttcattgaataactgatgtatatggtccttattatagaccagatacatcagtta 42896194  T
Q  405 ttcaatgaacttaaaaa 421  Q
    |||||||||| ||||||    
T  42896193 ttcaatgaacctaaaaa 42896177  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 19674593 - 19674644
Alignment:
Q  320 ccttgttataaaacataattcactttttaggttaattgaataattgatgtat 371  Q
    |||| |||||||| | ||||||||||||||||| |||||||||||| |||||    
T  19674593 ccttattataaaagacaattcactttttaggttcattgaataattgttgtat 19674644  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 32711233 - 32711307
Alignment:
Q  339 tcactttttaggttaattgaataattgatgtatctgatccgtataacaaaccatttacatcaattattcaatgaa 413  Q
    |||||||||||||| |||||||||||||||||| ||  |  ||| | | ||||  ||||||||||||||||||||    
T  32711233 tcactttttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaa 32711307  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 44664193 - 44664247
Alignment:
Q  319 tccttgttataaaacataattcactttttaggttaattgaataattgatgtatct 373  Q
    |||||| ||||||| |||||| | |||||||||| ||||||||||| ||||||||    
T  44664193 tccttgatataaaaaataattgattttttaggttcattgaataattaatgtatct 44664247  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 2544491 - 2544523
Alignment:
Q  341 actttttaggttaattgaataattgatgtatct 373  Q
    |||||||||||| ||||||||||||||||||||    
T  2544491 actttttaggttcattgaataattgatgtatct 2544523  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 24985960 - 24986069
Alignment:
Q  336 aattcactttttaggttaattgaataattgatgtatctgatccgtataacaaaccatttacatcaattattcaatgaacttaaaaaataaattgtacctt 435  Q
    |||||| |||| ||||| ||||||||| |||||||| |||||  ||| | | ||||| |||||||||||| |||||||| |||||| | ||||||  |||    
T  24985960 aattcatttttgaggttcattgaataactgatgtatttgatctatattatagaccatatacatcaattatccaatgaacctaaaaagtgaattgtctctt 24986059  T
Q  436 ataatgagga 445  Q
    ||||| ||||    
T  24986060 ataataagga 24986069  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 12240110 - 12240158
Alignment:
Q  316 tgatccttgttataaaacataattcactttttaggttaattgaataatt 364  Q
    |||||||| |||||||| |||||| | ||||||||||||||||||||||    
T  12240110 tgatccttattataaaaaataattgattttttaggttaattgaataatt 12240158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 24986075 - 24986017
Alignment:
Q  313 ctctgatccttgttataaaacataattcactttttaggttaattgaataattgatgtat 371  Q
    ||||| ||||| |||||| | | ||||||||||||||||| |||| |||||||||||||    
T  24986075 ctctgttccttattataagagacaattcactttttaggttcattggataattgatgtat 24986017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 373
Target Start/End: Original strand, 24089726 - 24089759
Alignment:
Q  340 cactttttaggttaattgaataattgatgtatct 373  Q
    ||||||||||||| ||||||||||||||||||||    
T  24089726 cactttttaggttcattgaataattgatgtatct 24089759  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 37716469 - 37716534
Alignment:
Q  306 atactctctctgatccttgttataaaacataattcactttttaggttaattgaataattgatgtat 371  Q
    |||||| ||| |||||||| ||||| |   |||||||||||||||||||||||||||| |||||||    
T  37716469 atactccctccgatccttgatataagaagaaattcactttttaggttaattgaataatagatgtat 37716534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 425
Target Start/End: Complemental strand, 41332740 - 41332657
Alignment:
Q  341 actttttaggttaattgaataattgatgtatctgatccgtataacaaaccatttacatcaattattcaatgaacttaaaaaataa 425  Q
    ||||||||  || |||||||||||||||||| |  ||  ||| |||||||| || ||| ||||||||||||||||||||||||||    
T  41332740 actttttacatttattgaataattgatgtattttgtctatattacaaaccaatt-cattaattattcaatgaacttaaaaaataa 41332657  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 371
Target Start/End: Original strand, 27075023 - 27075056
Alignment:
Q  338 ttcactttttaggttaattgaataattgatgtat 371  Q
    ||||||||||||||||||||||||| ||||||||    
T  27075023 ttcactttttaggttaattgaataaatgatgtat 27075056  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 30905153 - 30905238
Alignment:
Q  341 actttttaggttaattgaataattgatgtatctgatccgtataacaaaccatttacatcaattattcaatgaacttaaaaaataaa 426  Q
    |||||||||||| ||| ||| |||||||||| || ||| ||| | ||||||  ||||||| | ||| |||||||||||||| ||||    
T  30905153 actttttaggttcatttaattattgatgtatgtggtccatattataaaccacatacatcattaattgaatgaacttaaaaagtaaa 30905238  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 32457178 - 32457214
Alignment:
Q  340 cactttttaggttaattgaataattgatgtatctgat 376  Q
    |||||||||| || |||||||||||||||||||||||    
T  32457178 cactttttagatttattgaataattgatgtatctgat 32457214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 41464776 - 41464740
Alignment:
Q  394 tacatcaattattcaatgaacttaaaaaataaattgt 430  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  41464776 tacattaattattcaatgaacttaaaaaatcaattgt 41464740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 40364693 - 40364659
Alignment:
Q  343 tttttaggttaattgaataattgatgtatctgatc 377  Q
    ||||||||||||||||||||||||||||| |||||    
T  40364693 tttttaggttaattgaataattgatgtatttgatc 40364659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 27940856 - 27940771
Alignment:
Q  341 actttttaggttaattgaataattgatgtatctgatccgtataacaaaccatttacatcaattattcaatgaacttaaaaaataaa 426  Q
    |||||||||||| ||||||| | |||||||| |||||| ||| |  |||||  ||||||| | ||| ||||||| |||||||||||    
T  27940856 actttttaggttcattgaattaatgatgtatgtgatccatattatgaaccacatacatcattaattgaatgaacctaaaaaataaa 27940771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 31903088 - 31903035
Alignment:
Q  318 atccttgttataaaacataattcactttttaggttaattgaataattgatgtat 371  Q
    |||||| |||||||| |||||| | |||||||||| ||||||||||| ||||||    
T  31903088 atccttattataaaaaataattaattttttaggttcattgaataattaatgtat 31903035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 35436338 - 35436305
Alignment:
Q  340 cactttttaggttaattgaataattgatgtatct 373  Q
    ||||||||||||| ||||||||||||||||||||    
T  35436338 cactttttaggttcattgaataattgatgtatct 35436305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 46508256 - 46508223
Alignment:
Q  340 cactttttaggttaattgaataattgatgtatct 373  Q
    ||||||||||||||||||||||||||||| ||||    
T  46508256 cactttttaggttaattgaataattgatgcatct 46508223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 35349544 - 35349496
Alignment:
Q  325 ttataaaacataattcactttttaggttaattgaataattgatgtatct 373  Q
    |||||||| |||||| ||||||||| || ||||| ||||||||||||||    
T  35349544 ttataaaaaataattgactttttagattcattgagtaattgatgtatct 35349496  T

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