View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_55 (Length: 466)
Name: NF9005_low_55
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 47584074 - 47583630
Alignment:
| Q |
18 |
gttgtgaggtcgtaatgtgactccacctgtgtagaattttctattcaaccatataactggccattttgattcaaagagagaccatctacataaatagaga |
117 |
Q |
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| T |
47584074 |
gttgtgaggtcgtaatgtgactccacctgtgtagaattttctattcaaccatataactggccattttgattcaaagagagaccatgtacataaatagaga |
47583975 |
T |
|
| Q |
118 |
gatcaagataatgatcatgtaaattttaatttcttaaggataaccaattaatccataagtatagttttattcggagcatatgtttgaatacttctctttc |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583974 |
gatcaagataatgatcatgtaaattttcatttcttaaggataaccaattaatccataagtatagttttattcggagcatatgtttgaatacttctctttc |
47583875 |
T |
|
| Q |
218 |
aaaacagaaagactctagtatcaaactctattacaaacacaggatttttct-acaatatttgagcattttattgtttagcataaatgatggagaacaaag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47583874 |
aaaacagaaagactctagtatcaaactctattacaaacacaggatttttctaacaatatttgagcattttattgtttagcatcaatgatggagaacaaag |
47583775 |
T |
|
| Q |
317 |
ggttggttatgtctagctcattcccacaatccacaaactgatagcttacaataagatgtccctgttggtatcctctgccatctgtgtcgattctgttaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583774 |
ggttggttatgtctagctcattcccacaatccacaaactgatagcttacaataagatgtccctgttggtatcctctgccatctgtgtcgattctgttaaa |
47583675 |
T |
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| Q |
417 |
cactcccacatccaaatccaaccctccattgctgcattgatctac |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583674 |
cactcccacatccaaatccaaccctccattgctgcattgatctac |
47583630 |
T |
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