View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_60 (Length: 459)
Name: NF9005_low_60
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 23 - 425
Target Start/End: Original strand, 24054075 - 24054483
Alignment:
| Q |
23 |
aatacgtacgtacggtctcaattgtagtttcaacgacatcaaaaatggttgtcattctcgtatattaatcgcagattgtgaaacacatacactcttcgaa |
122 |
Q |
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| T |
24054075 |
aatacgtacgtacggtctcaattgtagtttcaacgacatcaaaaatggttgtcattcttgtatattaatcgcggattgtgaaacacatacactctttgga |
24054174 |
T |
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| Q |
123 |
ttagacgtgtcctaatataacacgtgctgtgttcaacactaacacgacactgacacacagttacacttaattgtgtgg--ttttttcaaaattattagtg |
220 |
Q |
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| T |
24054175 |
ttagacgtgtttcaatgtaatacgtgttgtgttcaacaccaacacgacactgacacatagttacacttaattgtatggttttttttttaaattattagtg |
24054274 |
T |
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| Q |
221 |
atatcggtgtgtc----agtaagtatccgtatcatgtttggtgtctatgtccatatccatgtttcatagatcaattgatatacctttaactcatgataat |
316 |
Q |
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| T |
24054275 |
atatcggtgtgtcagtaagtaagtatccgtatcatattcagtgtatatgtccatatccatgtttcatagatcaattgatatacctttaactcatgataat |
24054374 |
T |
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| Q |
317 |
aaatcacacctattatacctaattatttaaggacttcaannnnnnnagcaagaatccattttaatgctttaaagtgattgttacatgtttagtccataaa |
416 |
Q |
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| T |
24054375 |
aaatcacacctattatacctaattatttaaggacttcgatttttttagcaagaatccattttaatgctttaaagtgattgttacatgtttagtccataaa |
24054474 |
T |
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| Q |
417 |
cttcgttaa |
425 |
Q |
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| T |
24054475 |
cttcgttaa |
24054483 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 34257980 - 34258025
Alignment:
| Q |
240 |
tatccgtatcatgtttggtgtctatgtccatatccatgtttcatag |
285 |
Q |
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| T |
34257980 |
tatccgtatcatgtccgatgtctatgtccatgtccatgtttcatag |
34258025 |
T |
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