View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_62 (Length: 457)
Name: NF9005_low_62
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 4409376 - 4408947
Alignment:
| Q |
11 |
gagcagagaggaggttgagtaaagaagtgaaatccaaatcatcagagtaatccaaggaacgaaaaatatcaagagacgctttcgccacatattgcaagtt |
110 |
Q |
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| T |
4409376 |
gagcagtgaggaggttgagtaaagaagtgaaatccaaatcatcagagtaatccaaggaacgaaaaatatcaagagacgctttcgccacatattgcaagtt |
4409277 |
T |
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| Q |
111 |
gccaacatcattcaatgtggttttggtgctattaatatagtaaaaaacaagctcgtttaacatgaaggaagccacaccgtcgtcaatgtcaacgataatt |
210 |
Q |
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| T |
4409276 |
gccaacatcattcaatgtggttttggtgctattaatatagtaaaaaacaagctcgtttaacatgaaggaagccacaccgtcgtcaatgtcaacgataatt |
4409177 |
T |
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| Q |
211 |
ttcaatgtcttcaatgtaggtggcaagcaaattttgtcgtagtccttaacccaaaagtgattctccaaagtttctaggatagggcagccagagaggagga |
310 |
Q |
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| T |
4409176 |
ttcaatgtcttcaatgtaggtggcaagcaaattttgtcatagtccttaacccaaaagtgattctccagagtttctaggatagggcagccagagagaagga |
4409077 |
T |
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| Q |
311 |
catttatggaaagcattcccatataaccaatgttgagtttcaacttctttagtgatggtaaataaatgtccttacaccattgcaagtcaaaatatattgc |
410 |
Q |
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| T |
4409076 |
catttatggaaagcattcccatataaccaatgttgagtttcaacttctttagtgatggtaaataaatgtccttacaccattgcaagtcaaaatatattgc |
4408977 |
T |
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| Q |
411 |
accaacaagactgagctacatgtcaattgt |
440 |
Q |
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| T |
4408976 |
accaacaagactgagctacatgtcaattgt |
4408947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 23664761 - 23664857
Alignment:
| Q |
276 |
caaagtttctaggatagggcagccagagaggaggacatttatggaaagcattcccatataaccaatgttgagtttcaacttctttagtgatggtaaa |
372 |
Q |
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||||||||||| ||||||| ||||||| |||||| |||| |||||| ||| ||| |||||| || | ||| | || |||||||||||| |||||| |
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| T |
23664761 |
caaagtttctaagatagggaagccagacaggagggcattcatggaacgcacgtccacataaccgatatcgagatgcagcttctttagtgacggtaaa |
23664857 |
T |
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