View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_64 (Length: 456)
Name: NF9005_low_64
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 200 - 439
Target Start/End: Original strand, 42210425 - 42210669
Alignment:
| Q |
200 |
taatacgtcaccttttcctataaactaagttacgatctcttgatcaagaaatcaatgattgatattatatgcacctaacaaataataattgattgatgcg |
299 |
Q |
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| T |
42210425 |
taatgcgtcaccttttactataaactaagttacgatctcttgatcaagaaatcaatgattgatattatatacacctaacaaataataattgattgatgcc |
42210524 |
T |
|
| Q |
300 |
ttcaaatatgactgctagtttttccgctttaacatgtattcactttaaaggagtcaaattagtt-----acttgtcgattgtgtgttgcattttctttta |
394 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42210525 |
ttcaaatatgactactagtttttccgctttaacatgtattcactttaaaggagtcaaattagttacttaacttgtcgattgtgtgttgcattttctttta |
42210624 |
T |
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| Q |
395 |
tccttatttggagacagaatagaaaaagaaaaccgacgttctgtg |
439 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42210625 |
tccttatttggagacagaatagaaaaagaaaaccgacgttctgtg |
42210669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 42210039 - 42210247
Alignment:
| Q |
17 |
agtacttagtaatatcatatatatttggacactttaaaatcatggttaattaatttgatgatcaatgtgttttaacaacttatattcattaaacacaatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42210039 |
agtacttagtaatatcatatatatttggacactttaaaatcatggttaattaatttgatgatcaatgtgttttaacaacttatattcattaaacacaatc |
42210138 |
T |
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| Q |
117 |
acacacatatttaagttgtg-----------ttgtttttgaaattttattttcaagagatgattatctattttcacctttctctataaactaactaatac |
205 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42210139 |
acacacatatttaagttgtgtatcatcagtattgtttttgaaattttattttcaagagatgattatctattttcacctttctcaataaactaactaatac |
42210238 |
T |
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| Q |
206 |
gtcaccttt |
214 |
Q |
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||||||||| |
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| T |
42210239 |
gtcaccttt |
42210247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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