View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_68 (Length: 452)
Name: NF9005_low_68
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 44014496 - 44014089
Alignment:
| Q |
14 |
cagagagaacatcactcaacaaactcaaacacagactctctgaaatcttcttccctgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaa |
113 |
Q |
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| T |
44014496 |
cagagagaacatcactcaacaaactcaaacacagactctctgaaatcttcttccccgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaa |
44014397 |
T |
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| Q |
114 |
gtttcttcttacccttcaattcttgttccccatttttcaatggggttctcagtatactctcacccttcttcgttctgatgtcatttctggtctcaccatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44014396 |
gtttcttcttacccttcaattcttgttccccatttttcaatggggttctcagtatactctcacccttcttcgttctgatgtcatttctggtctcaccatt |
44014297 |
T |
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| Q |
214 |
gccagccttgccattcctcaggtataacacacactaacttcttacatatgtctctgatatacttgatattgaagacttgtttggtgtcgagacatactat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
44014296 |
gccagccttgccattcctcaggtataacacacactaacttcttacatatgtctccgatatacttgatattgaagacgtgt---gtgtcgagacatactat |
44014200 |
T |
|
| Q |
314 |
atttaattatttcattttgtgaaattaagacgtatctaatgtccactaatgtccaaaaatacgtggttacactcaattattttattttatgtaattacca |
413 |
Q |
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||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44014199 |
atttaattatttcattttgtgaaattaagacatat----------ctgatgtccaaaaatacgtggttacactcaattattttattttatgaaattacca |
44014110 |
T |
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| Q |
414 |
ttgatgttagtgtcgtgtttg |
434 |
Q |
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| T |
44014109 |
ttgatgttagtgtcgtgtttg |
44014089 |
T |
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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 3172739 - 3172931
Alignment:
| Q |
46 |
agactctctgaaatcttcttccctgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaagtttcttcttacccttcaattcttgttcccca |
145 |
Q |
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||||||||||||||||| || |||||||| ||||| || | |||||||||||| | || || |||||||||||||| | ||||||| | |||| || | |
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| T |
3172739 |
agactctctgaaatcttttttcctgatgacccttttcatggattcaaaaaccaaacttccttcacaaagtttcttctggctcttcaatacatgtttccga |
3172838 |
T |
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| Q |
146 |
tttttcaatggggttctcagtatactctcacccttcttcgttctgatgtcatttctggtctcaccattgccagccttgccattcctcaggtat |
238 |
Q |
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|||||||||||||| ||||||||| ||| | ||| | || || ||| | || || ||||||||||| ||||| || |||||||||||||||| |
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| T |
3172839 |
tttttcaatggggtcctcagtatagtcttaatcttttacgctccgatattatatccggtctcaccatcgccagtctcgccattcctcaggtat |
3172931 |
T |
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