View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_7 (Length: 707)

Name: NF9005_low_7
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_7
NF9005_low_7
[»] chr6 (5 HSPs)
chr6 (245-576)||(28983343-28983676)
chr6 (15-180)||(28982372-28982528)
chr6 (172-227)||(28982711-28982766)
chr6 (536-631)||(28984194-28984289)
chr6 (15-72)||(28966536-28966592)
[»] chr7 (5 HSPs)
chr7 (387-529)||(42863689-42863833)
chr7 (429-514)||(29367313-29367398)
chr7 (422-522)||(29346780-29346882)
chr7 (428-494)||(29293421-29293487)
chr7 (308-466)||(32471192-32471359)
[»] chr8 (2 HSPs)
chr8 (387-514)||(11364590-11364716)
chr8 (429-522)||(36315999-36316093)
[»] chr2 (1 HSPs)
chr2 (429-489)||(5700067-5700128)
[»] chr4 (1 HSPs)
chr4 (387-503)||(23406596-23406713)
[»] chr1 (1 HSPs)
chr1 (475-520)||(46502786-46502831)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 245 - 576
Target Start/End: Original strand, 28983343 - 28983676
Alignment:
Q  245 tatttagaactaatatgtgttttagatttgattcacaccacgctgttatgattcaatatgacgtatgatgaagtacacttggcataatattattggttga 344  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28983343 tatttagaaccaatatgtgttttagatttgattcacaccacgctgttatgattcaatatgacatatgatgaagtacacttggcataatattattggttga 28983442  T
Q  345 ggcaagttgatatgtggaaattctacaattaagaaaatttaaattgtgcataaatagagagatgatggtcactaaggggcatgtagaaaaatgatgaagt 444  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28983443 ggcaagttgatacgtggaaattctacaattaagaaaatttaaattgtgcataaatagagagatgatggtcactaaagggcatgtagaaaaatgatgaagt 28983542  T
Q  445 ctcccatctctccctttggtaccctctaatagagttatgacttaggtcttaggactaagtcttcttcta--tttttctttctcttatatctataagagtg 542  Q
    ||||| ||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||  ||| |||||||||| ||||||||||||||    
T  28983543 ctcccctctctccgtttggtactctctaatagagtaatgacttgggtcttaggactaagtcttcttctatctttctctttctcttctatctataagagtg 28983642  T
Q  543 gtttgcaagacaatagtaggatcaacaccatacc 576  Q
    | ||||||||||||||||||||||| ||||||||    
T  28983643 gcttgcaagacaatagtaggatcaagaccatacc 28983676  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 28982372 - 28982528
Alignment:
Q  15 agatatgatatatgttgaattttgatagtgacacattacaacatctatatgcaatgtaagatatatggaaaagaaatccatcaaactctcacaccatata 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  28982372 agatatgaaatatgttgaattttgatagtgacacattacaacatc--------atgtaagatatatggaaaagaaacccatcaaactct-acaccatata 28982462  T
Q  115 taggatgcatgcatgtaggtgtttttataagtttaattattagttgctaaactagagaattttaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28982463 taggatgcatgcatgtaggtgtttttataagtttaattattagttcctaaactagagaattttaaa 28982528  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 28982711 - 28982766
Alignment:
Q  172 aattttaaatgggtcctttgttagaaaaacggttgttggggaaaattataaaacat 227  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  28982711 aattttaaatgagtcctttgttggaaaaacggttgttggggaaaattataaaacat 28982766  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 631
Target Start/End: Original strand, 28984194 - 28984289
Alignment:
Q  536 aagagtggtttgcaagacaatagtaggatcaacaccatacctnnnnnnncacaccaaatgccaaagggcgtacccaaacatctggctaacgagaca 631  Q
    ||||| || ||||| ||||||||||||||||||||||||||        |||| |||||||||||| ||| | |||||||| | ||||||||||||    
T  28984194 aagagaggcttgcacgacaatagtaggatcaacaccatacccaaaaaaacacatcaaatgccaaagtgcgcatccaaacatatagctaacgagaca 28984289  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 28966536 - 28966592
Alignment:
Q  15 agatatgatatatgttgaattttgatagtgacacattacaacatctatatgcaatgta 72  Q
    |||| |||||||| ||||||||||||| | |  |||||||||||||||||||||||||    
T  28966536 agatgtgatatat-ttgaattttgataatcatgcattacaacatctatatgcaatgta 28966592  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 387 - 529
Target Start/End: Original strand, 42863689 - 42863833
Alignment:
Q  387 attgtgcataaatagagagatgatggtcactaaggggcatgtagaaaaatgatgaagtctcccatctctccctttggtaccctctaatagagttatgact 486  Q
    |||||||||||||||||  ||||||||||||||| || ||| ||||||||||  ||||||| | ||||||| ||||  || |  |  |||||| ||||||    
T  42863689 attgtgcataaatagaggaatgatggtcactaagaggtatgaagaaaaatgaccaagtctctcttctctccttttgacactcattggtagagtaatgact 42863788  T
Q  487 taggtcttaggactaagtcttcttcta--tttttctttctcttat 529  Q
    || |||||||||||| |||||||||||  ||||||||| ||||||    
T  42863789 taagtcttaggactaggtcttcttctatctttttctttttcttat 42863833  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 429 - 514
Target Start/End: Complemental strand, 29367398 - 29367313
Alignment:
Q  429 agaaaaatgatgaagtctcccatctctccctttggtaccctctaatagagttatgacttaggtcttaggactaagtcttcttctat 514  Q
    |||||| |||||||||||  |||||||| ||||  ||| ||||| |||||| |||||||| ||||||||||| |||||||||||||    
T  29367398 agaaaagtgatgaagtctatcatctctctctttaatactctctagtagagtaatgacttaagtcttaggacttagtcttcttctat 29367313  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 522
Target Start/End: Complemental strand, 29346882 - 29346780
Alignment:
Q  422 ggcatgtagaaaaatgatgaa-gtctcccatctctccctttggtaccctctaatagagttatgacttaggtcttaggactaagtcttcttctat-ttttc 519  Q
    |||||| |||||||||||||| ||||| | | |||||||||||||| ||||   || || |||||||| ||||| ||||||||||||||||||| |||||    
T  29346882 ggcatgaagaaaaatgatgaaagtctctcctttctccctttggtactctctttgagggtaatgacttaagtctttggactaagtcttcttctatcttttc 29346783  T
Q  520 ttt 522  Q
    |||    
T  29346782 ttt 29346780  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 29293487 - 29293421
Alignment:
Q  428 tagaaaaatgatgaagtctcccatctctccctttggtaccctctaatagagttatgacttaggtctt 494  Q
    |||||||||||||||||||| | ||||||  || ||||| |||||||||||| ||| |||| |||||    
T  29293487 tagaaaaatgatgaagtctctcctctctcttttgggtactctctaatagagtaatgccttatgtctt 29293421  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 466
Target Start/End: Complemental strand, 32471359 - 32471192
Alignment:
Q  308 tatgatgaagtacacttggcataatattattggttgaggcaagttgatatg----tggaaattctacaattaagaaaatttaaattgtgcataaatagag 403  Q
    ||||| ||| ||| |||||||||||||||||||||||||||| | || |||    | |  || ||| ||| ||| ||  ||  |||||||||||||||||    
T  32471359 tatgaggaaatacgcttggcataatattattggttgaggcaaatggacatgtagttagtgatcctaaaatcaaggaagcttggattgtgcataaatagag 32471260  T
Q  404 agatgatggtcactaaggggc-----atgtagaaaaatgatgaagtctcccatctctccctttggtac 466  Q
    | |||||| ||||| |||| |     ||| |||||| |||||||||||| | ||||||||||||||||    
T  32471259 aaatgatgatcactgagggccgggttatgaagaaaattgatgaagtctctcctctctccctttggtac 32471192  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 514
Target Start/End: Complemental strand, 11364716 - 11364590
Alignment:
Q  387 attgtgcataaatagagagatgatggtcactaaggggcatgtagaaaaatgatgaagtctcccatctctccctttggtaccctctaatagagttatgact 486  Q
    |||||||||||||||||| |||||| ||||||||||| ||| ||||||||||   ||| || | |||| ||||||||||| ||| | |||||| ||| ||    
T  11364716 attgtgcataaatagagaaatgatgatcactaaggggtatgaagaaaaatgacatagtatctcctctc-ccctttggtactctcaagtagagtaatggct 11364618  T
Q  487 taggtcttaggactaagtcttcttctat 514  Q
    || |||||  ||||  ||||||||||||    
T  11364617 taagtctttcgacttggtcttcttctat 11364590  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 522
Target Start/End: Complemental strand, 36316093 - 36315999
Alignment:
Q  429 agaaaaatgatgaag-tctcccatctctccctttggtaccctctaatagagttatgacttaggtcttaggactaagtcttcttctat-ttttcttt 522  Q
    ||||||||||||||  |||| | |||||||||||| ||| ||||| |||||| |||| ||| ||||||||||| | ||||||||||| ||||||||    
T  36316093 agaaaaatgatgaaaatctctcctctctccctttgatactctctagtagagtaatgattta-gtcttaggacttaatcttcttctatgttttcttt 36315999  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 5700067 - 5700128
Alignment:
Q  429 agaaaaatgat-gaagtctcccatctctccctttggtaccctctaatagagttatgacttag 489  Q
    ||||||||||| |||||||| | |||||||||||||||| ||||| |||||| |||||||||    
T  5700067 agaaaaatgattgaagtctctcctctctccctttggtactctctagtagagtaatgacttag 5700128  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 503
Target Start/End: Original strand, 23406596 - 23406713
Alignment:
Q  387 attgtgcataaatagagagatgatggtcactaaggggcatgtagaaaaatgatg-aagtctcccatctctccctttggtaccctctaatagagttatgac 485  Q
    ||||||| |||| || || | |||| ||||||||||  ||| |||||||||||| ||||||| | |||||| ||||||||| ||||   ||||| ||| |    
T  23406596 attgtgcttaaacagggaaaggatgatcactaagggttatgaagaaaaatgatgaaagtctctcctctctctctttggtactctctttgagagtaatggc 23406695  T
Q  486 ttaggtcttaggactaag 503  Q
    ||| ||||| ||||||||    
T  23406696 ttaagtctttggactaag 23406713  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 46502786 - 46502831
Alignment:
Q  475 agagttatgacttaggtcttaggactaagtcttcttctatttttct 520  Q
    ||||| ||| ||||||||||  ||||||||||||||||||||||||    
T  46502786 agagtaatggcttaggtctttagactaagtcttcttctatttttct 46502831  T

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