View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_71 (Length: 448)
Name: NF9005_low_71
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 25349518 - 25349094
Alignment:
| Q |
1 |
cactaatctcatggttaacatgccttgatttgctcaagttgagtctccaatgacttggattagagttgttcctttaattgagactttgtgatgagcctgt |
100 |
Q |
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|||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
25349518 |
cactaatcgcatgattaacatgctttgatttgctcaagttgagtcaacaatgacttggattagagttgttcctttaactgagactttgtgatgagcttgt |
25349419 |
T |
|
| Q |
101 |
agtgctcggccatggc-caggttactcggatatgggcctcaacaagaatatggattaggggtcgagtcatggcccaaaataaaactatccatagagtcat |
199 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25349418 |
agtgctcggccatgggtcaagttactcggatatgggcctcaacaacaatatggattaggggtcgagtcatggcccaaaataaaactatccatagagtcat |
25349319 |
T |
|
| Q |
200 |
gtatatctttatttaggacataaaatctcgttgatctttttgatgcaaaccctaaatttgtgataatttcaaggatcataataatgtagacttgcttatt |
299 |
Q |
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| ||| ||||| ||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
25349318 |
ggatagctttaattaggacatgaaatctcgttgacctttttggcgcaaaccctagatttgtgataatttcaaagatcataataatatagacttgcttatt |
25349219 |
T |
|
| Q |
300 |
gggttgcttgattgatgttattctcgttttcttttatgnnnnnnncattgataaagtctaaaaactatctctctatttctatatttctattttatgcgaa |
399 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25349218 |
aggttgcttgattgatgttattctcaatttcttttatgaaaaaaacattgataaagtctaaaaactatctctc--------tatttctattttatgcgaa |
25349127 |
T |
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| Q |
400 |
ctagatcctttttcaataaaggataatcttcct |
432 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
25349126 |
ctagattgtttttcaataaaggataatcttcct |
25349094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 24922020 - 24922155
Alignment:
| Q |
1 |
cactaatctcatggttaacatgccttgatttgctcaagttgagtctccaatgacttggattagagttgttcctttaattgagactttgtgatgagcctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24922020 |
cactaatctcatggttaacatgccttgatttgctcaagttgagtctacaatgacttggattagagttgttcctttaactgagactttgtgatgagcctgt |
24922119 |
T |
|
| Q |
101 |
agtgctcggccat-ggccaggttactcggatatggg |
135 |
Q |
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||||||||||||| |||||||||||||| ||||||| |
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| T |
24922120 |
agtgctcggccatgggccaggttactcgaatatggg |
24922155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 28625916 - 28626016
Alignment:
| Q |
80 |
gagactttgtgatgagcctgtagtgctcggccatgg-ccaggttactcggatatgggcctcaacaagaatatggattaggggtcgagtcatggcccaaaa |
178 |
Q |
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||||||||| ||||||| ||| ||||||||||||| |||| ||||| ||| |||||||||| | ||||||||||| || || |||||||||||||| |
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| T |
28625916 |
gagactttgggatgagcgcgtaatgctcggccatggtccagattacttggacatgggcctcagcttccatatggattagtggccgggtcatggcccaaaa |
28626015 |
T |
|
| Q |
179 |
t |
179 |
Q |
| |
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| |
|
|
| T |
28626016 |
t |
28626016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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