View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_72 (Length: 445)
Name: NF9005_low_72
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 21872070 - 21871644
Alignment:
| Q |
1 |
cactgttttcttttgtggaatatcaatgtcacattatgcatggcataatgtcactgaaatttcaagaataacaaccaggtatttggctaatccattatag |
100 |
Q |
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| T |
21872070 |
cactgttttcttttgtggaatatcaatgtcacattatgcatggcataatgtcactgaaatttcaagaataacaaccaggtatttggctaatccattgtag |
21871971 |
T |
|
| Q |
101 |
atttttagtaatttccagactaaaggtctaagatttctgattttagtttcacttctccaggcacgtattcgcaacaatgtcgtttattgcagaaaccttc |
200 |
Q |
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| T |
21871970 |
atttt-agtaatttccagacttaaggtctaagatttctgattttagtttcacttctccaggcacgtattcgcaacaatgtcgtttattgcagaaaccttc |
21871872 |
T |
|
| Q |
201 |
atatttctttatgtcggtatggatgcccttgacattgaaaagtggaggatgacccatttaaagtacgattactttttacaactcggtacaattagtttcc |
300 |
Q |
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| T |
21871871 |
atatttctttatgtcggtatggatgcccttgacattgaaaagtggaggatgacccatttaaagtacgattactttttacaactcggtacaattagtttcc |
21871772 |
T |
|
| Q |
301 |
ttacgactaatgcgttagacactgatctatgttatgttatttatggtctagtgcatgtgccggtatcatatgtgtacaagctttctatctacatagtgcc |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21871771 |
ttatgactaatgcgttagacactgatctatgttatgttatttatggtctagtgcatgtgccggtatcatatgtgtacaagctttctatctgcatagtgcc |
21871672 |
T |
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| Q |
401 |
aatgtgccacttacctacatagataact |
428 |
Q |
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| T |
21871671 |
aatgtgccacttacctacatagataact |
21871644 |
T |
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